Lineage for Protein: automated matches
- Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) 
there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
Family c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module [88766] (5 proteins)
parent family to TK and PFOR
heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
Protein automated matches [190098] (3 species)
not a true protein
Species:
Bacillus stearothermophilus [TaxId:1422] [188729] (3 PDB entries) - Domains for 3duf:
Domain d3dufa_: 3duf A: [174232]
Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2, d3dufi_, d3dufj_
automated match to d1w85a_
complexed with k, mg, r1t
Domain d3dufc_: 3duf C: [174233]
Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2, d3dufi_, d3dufj_
automated match to d1w85a_
complexed with k, mg, r1t
Domain d3dufe_: 3duf E: [174234]
Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2, d3dufi_, d3dufj_
automated match to d1w85a_
complexed with k, mg, r1t
Domain d3dufg_: 3duf G: [174235]
Other proteins in same PDB: d3dufb1, d3dufb2, d3dufd1, d3dufd2, d3duff1, d3duff2, d3dufh1, d3dufh2, d3dufi_, d3dufj_
automated match to d1w85a_
complexed with k, mg, r1t
- Domains for 3dv0:
Domain d3dv0a_: 3dv0 A: [174255]
Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2, d3dv0i_, d3dv0j_
automated match to d1w85a_
complexed with k, mg, pyr, tpw
Domain d3dv0c_: 3dv0 C: [174256]
Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2, d3dv0i_, d3dv0j_
automated match to d1w85a_
complexed with k, mg, pyr, tpw
Domain d3dv0e_: 3dv0 E: [174257]
Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2, d3dv0i_, d3dv0j_
automated match to d1w85a_
complexed with k, mg, pyr, tpw
Domain d3dv0g_: 3dv0 G: [174258]
Other proteins in same PDB: d3dv0b1, d3dv0b2, d3dv0d1, d3dv0d2, d3dv0f1, d3dv0f2, d3dv0h1, d3dv0h2, d3dv0i_, d3dv0j_
automated match to d1w85a_
complexed with k, mg, pyr, tpw
- Domains for 3dva:
Domain d3dvaa_: 3dva A: [174271]
Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2, d3dvai_, d3dvaj_
automated match to d1w85a_
complexed with k, mg, tpw
Domain d3dvac_: 3dva C: [174272]
Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2, d3dvai_, d3dvaj_
automated match to d1w85a_
complexed with k, mg, tpw
Domain d3dvae_: 3dva E: [174273]
Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2, d3dvai_, d3dvaj_
automated match to d1w85a_
complexed with k, mg, tpw
Domain d3dvag_: 3dva G: [174274]
Other proteins in same PDB: d3dvab1, d3dvab2, d3dvad1, d3dvad2, d3dvaf1, d3dvaf2, d3dvah1, d3dvah2, d3dvai_, d3dvaj_
automated match to d1w85a_
complexed with k, mg, tpw
- Domains for 3duf:
Human (Homo sapiens) [TaxId:9606] [186820] (5 PDB entries) - Domain for 1wci:
Domain d1wcia_: 1wci A: [120890]
Other proteins in same PDB: d1wcib1, d1wcib2
automated match to d1olxa_
complexed with cl, gol, k, mn, wwf
- Domain for 2beu:
Domain d2beua_: 2beu A: [128389]
Other proteins in same PDB: d2beub1, d2beub2
automated match to d1olxa_
complexed with cl, gol, k, mn, so4, thv
- Domain for 2bev:
Domain d2beva_: 2bev A: [128392]
Other proteins in same PDB: d2bevb1, d2bevb2
automated match to d1olxa_
complexed with cl, gol, k, mn, thy
- Domain for 2bew:
Domain d2bewa_: 2bew A: [128395]
Other proteins in same PDB: d2bewb1, d2bewb2
automated match to d1olxa_
complexed with cl, gol, k, mn, thw
- Domains for 2j9f:
Domain d2j9fa_: 2j9f A: [165952]
Other proteins in same PDB: d2j9fb1, d2j9fb2, d2j9fb3, d2j9fd1, d2j9fd2, d2j9fd3
automated match to d1olxa_
complexed with gol, k, mn, thv
Domain d2j9fc_: 2j9f C: [165953]
Other proteins in same PDB: d2j9fb1, d2j9fb2, d2j9fb3, d2j9fd1, d2j9fd2, d2j9fd3
automated match to d1olxa_
complexed with gol, k, mn, thv
- Domain for 1wci:
Pseudomonas putida [TaxId:303] [186989] (1 PDB entry) - Domains for 2bp7:
Domain d2bp7a_: 2bp7 A: [128926]
Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
automated match to d1qs0a_
Domain d2bp7c_: 2bp7 C: [128929]
Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
automated match to d1qs0a_
Domain d2bp7e_: 2bp7 E: [128932]
Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
automated match to d1qs0a_
Domain d2bp7g_: 2bp7 G: [128935]
Other proteins in same PDB: d2bp7b1, d2bp7b2, d2bp7d1, d2bp7d2, d2bp7f1, d2bp7f2, d2bp7h1, d2bp7h2
automated match to d1qs0a_
- Domains for 2bp7:
More info for Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module
Timeline for Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module:
- Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module first appeared in SCOPe 2.01
- Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module appears in SCOPe 2.05
- Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module appears in SCOPe 2.07
- Protein automated matches from c.36.1.11: Branched-chain alpha-keto acid dehydrogenase PP module appears in the current release, SCOPe 2.08