SCOPe 2.08: Domain d1omda_: 1omd A:

Lineage for d1omda_ (1omd A:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.39: EF Hand-like [47472] (4 superfamilies)
   core: 4 helices; array of 2 hairpins, opened

4. Superfamily a.39.1: EF-hand [47473] (12 families)
   Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop

5. Family a.39.1.4: Parvalbumin [47492] (3 proteins)
   6-helices; array of 3 hairpins, closed
   made with two-helical hairpin and two EF-hands

6. Protein Oncomodulin [47493] (1 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [47494] (3 PDB entries)

8. Domain d1omda_: 1omd A: [17196]
   complexed with ca

Details for d1omda_

PDB Entry: 1omd, 1.85 Å

PDB Description: structure of oncomodulin refined at 1.85 angstroms resolution. an example of extensive molecular aggregation via ca2+

PDB Compounds: (A:) Oncomodulin

SCOPe Domain Sequences for d1omda_:

Sequence; same for both SEQRES and ATOM records:

>d1omda_ a.39.1.4 (A:) Oncomodulin {Norway rat (Rattus norvegicus) [TaxId: 10116]}
itdilsaediaaalqecqdpdtfepqkffqtsglskmsasqvkdifrfidndqsgyldgd
elkyflqkfqsdareltesetkslmdaadndgdgkigadefqemvhs

Timeline for d1omda_:

• d1omda_ first appeared (with stable ids) in SCOP 1.55, called d1omd__
  
• d1omda_ appears in SCOPe 2.07