PDB entry 7vnm

View 7vnm on RCSB PDB site
Description: Rba sphaeroides PufY-KO RC-LH1 monomer
Class: photosynthesis
Keywords: photosystem, Complex, Mutant, PHOTOSYNTHESIS
Deposited on 2021-10-11, released 2022-05-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2022-05-04, with a file datestamp of 2022-04-29.
Experiment type: EM
Resolution: 2.86 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm0_
  • Chain '1':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm1_
  • Chain '2':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm2_
  • Chain '7':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm7_
  • Chain '8':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm8_
  • Chain '9':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnm9_
  • Chain 'A':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnma_
  • Chain 'B':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmb_
  • Chain 'C':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmc_
  • Chain 'D':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmd_
  • Chain 'E':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnme_
  • Chain 'F':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmf_
  • Chain 'G':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmg_
  • Chain 'H':
    Compound: reaction center protein h chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmi_
  • Chain 'J':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmj_
  • Chain 'K':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmk_
  • Chain 'L':
    Compound: reaction center protein l chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnml_
  • Chain 'M':
    Compound: reaction center protein m chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmm_
  • Chain 'N':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmn_
  • Chain 'O':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmo_
  • Chain 'P':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmp_
  • Chain 'Q':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmq_
  • Chain 'R':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmr_
  • Chain 'S':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnms_
  • Chain 'T':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmt_
  • Chain 'U':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmu_
  • Chain 'V':
    Compound: Light-harvesting protein B-875 beta chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmv_
  • Chain 'W':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7vnmw_
  • Chain 'X':
    Compound: Intrinsic membrane protein pufX
    Species: Cereibacter sphaeroides 2.4.1 [TaxId:272943]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BCL, BPH, CDL, FE2, PC1, SPO, U10

PDB Chain Sequences:

  • Chain '0':
    Sequence, based on SEQRES records: (download) 
    >7vnm0 (0:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm0 (0:)
dlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >7vnm1 (1:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm1 (1:)
dprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >7vnm2 (2:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm2 (2:)
qelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '7':
    Sequence, based on SEQRES records: (download) 
    >7vnm7 (7:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm7 (7:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwlei

  • Chain '8':
    Sequence, based on SEQRES records: (download) 
    >7vnm8 (8:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm8 (8:)
dlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '9':
    Sequence, based on SEQRES records: (download) 
    >7vnm9 (9:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnm9 (9:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7vnmA (A:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmA (A:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7vnmB (B:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmB (B:)
sdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7vnmC (C:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmC (C:)
ltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7vnmD (D:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmD (D:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7vnmE (E:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmE (E:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7vnmF (F:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmF (F:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7vnmG (G:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmG (G:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7vnmI (I:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmI (I:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7vnmJ (J:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmJ (J:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7vnmK (K:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmK (K:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7vnmL (L:)
mallsferkyrvpggtlvggnlfdfwvgpfyvgffgvatfffaalgiiliawsavlqgtw
npqlisvyppaleyglggaplakgglwqiiticatgafvswalreveicrklgigyhipf
afafailayltlvlfrpvmmgawgyafpygiwthldwvsntgytygnfhynpahmiaisf
fftnalalalhgalvlsaanpekgkemrtpdhedtffrdlvgysigtlgihrlglllsls
avffsalcmiitgtiwfdqwvdwwqwwvklpwwanipgging

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmL (L:)
allsferkyrvpggtlvggnlfdfwvgpfyvgffgvatfffaalgiiliawsavlqgtwn
pqlisvyppaleyglggaplakgglwqiiticatgafvswalreveicrklgigyhipfa
fafailayltlvlfrpvmmgawgyafpygiwthldwvsntgytygnfhynpahmiaisff
ftnalalalhgalvlsaanpekgkemrtpdhedtffrdlvgysigtlgihrlglllslsa
vffsalcmiitgtiwfdqwvdwwqwwvklpwwanipgging

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7vnmM (M:)
maeyqnifsqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvls
lfsglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwlias
ffmfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygi
fshldwtnnfslvhgnlfynpfhglsiaflygsallfamhgatilavsrfggereleqia
drgtaaeraalfwrwtmgfnatmegihrwaiwmavlvtltggigillsgtvvdnwyvwgq
nhgmapln

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmM (M:)
eyqnifsqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvlslf
sglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwliasff
mfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygifs
hldwtnnfslvhgnlfynpfhglsiaflygsallfamhgatilavsrfggereleqiadr
gtaaeraalfwrwtmgfnatmegihrwaiwmavlvtltggigillsgtvvdnwyvwgqnh
gmapl

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >7vnmN (N:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmN (N:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >7vnmO (O:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmO (O:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7vnmP (P:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmP (P:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >7vnmQ (Q:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmQ (Q:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7vnmR (R:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmR (R:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >7vnmS (S:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmS (S:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7vnmT (T:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmT (T:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >7vnmU (U:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmU (U:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >7vnmV (V:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmV (V:)
tgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >7vnmW (W:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrvavae

    Sequence, based on observed residues (ATOM records): (download) 
    >7vnmW (W:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'X':
    No sequence available.