PDB entry 5w6g
View 5w6g on RCSB PDB site
Description: Human antibody 6649 in complex with influenza hemagglutinin H1 Solomon Islands
Class: viral protein/immune system
Keywords: Antibody, FAB, Influenza H1N1, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2017-06-16, released
2017-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-12-20, with a file datestamp of
2017-12-15.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: N/A
AEROSPACI score: 0.15
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hemagglutinin HA1
Species: Influenza A virus (A/Solomon Islands/3/2006(H1N1)) [TaxId:464623]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5w6ga1, d5w6ga2 - Chain 'B':
Compound: hemagglutinin HA2
Species: Influenza A virus (A/Solomon Islands/3/2006(H1N1)) [TaxId:464623]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5w6gb_ - Chain 'H':
Compound: 6649 antibody heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5W6G (0-116)
- Uniprot S6B2B6 (117-End)
- conflict (124)
- conflict (147)
- Chain 'L':
Compound: 6649 antibody light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5W6G (Start-116)
- Uniprot Q6GMX4 (117-End)
Domains in SCOPe 2.06: d5w6gl1, d5w6gl2 - Heterogens: NAG, SO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5w6gA (A:)
adpgylledticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplql
gncsvagwilgnpecellisreswsyivekpnpengtcypghfadyeelreqlssvssfe
rfeifpkesswpnhtttgvsascshngessfyknllwltgknglypnlsksyannkekev
lvlwgvhhppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdregrinyywtl
lepgdtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfq
nvhpvtigecpkyvrsaklrmvtglrnipsiqsr
Sequence, based on observed residues (ATOM records): (download)
>5w6gA (A:)
ylledticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncs
vagwilgnpecellisreswsyivekpnpengtcypghfadyeelreqlssvssferfei
fpkesswpnhtttgvsascshngessfyknllwltgknglypnlsksyannkekevlvlw
gvhhppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdregrinyywtllepg
dtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhp
vtigecpkyvrsaklrmvtglrnips
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5w6gB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrekidgvrs
Sequence, based on observed residues (ATOM records): (download)
>5w6gB (B:)
aiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmntqft
avgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlyekvks
qlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrek
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>5w6gL (L:)
qsvltqppsvsgapgqrvsisctgthsnigagfdvhwyqqlpgtapklliyannnrpsgv
pdrfsgsksgssaslaitglqaedeadyycqsfdsilsgdlvfgggtkltvlgqpkgaps
vtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaa
ssylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>5w6gL (L:)
svltqppsvsgapgqrvsisctgthsnigagfdvhwyqqlpgtapklliyannnrpsgvp
drfsgsksgssaslaitglqaedeadyycqsfdsilsgdlvfgggtkltvlgqpkgapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt