PDB entry 1hfe

View 1hfe on RCSB PDB site
Description: 1.6 a resolution structure of the fe-only hydrogenase from desulfovibrio desulfuricans
Class: hydrogenase
Keywords: fe-only hydrogenase, hydrogene metabolism, periplasm, hydrogenase
Deposited on 1998-11-11, released 1999-04-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'L':
    Compound: protein (fe-only hydrogenase (e.c.1.18.99.1) (larger subunit))
    Species: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hfel1, d1hfel2
  • Chain 'M':
    Compound: protein (fe-only hydrogenase (e.c.1.18.99.1) (larger subunit))
    Species: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hfem1, d1hfem2
  • Chain 'S':
    Compound: protein (fe-only hydrogenase (e.c.1.18.99.1) (smaller subunit))
    Species: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hfes_
  • Chain 'T':
    Compound: protein (fe-only hydrogenase (e.c.1.18.99.1) (smaller subunit))
    Species: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hfet_
  • Heterogens: ZN, FE2, CYN, SF4, PDT, CMO, CYS, HOH

PDB Chain Sequences:

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1hfeL (L:)
msrtvmerieyemhtpdpkadpdklhfvqideakcigcdtcsqycptaaifgemgephsi
phieacincgqclthcpenaiyeaqswvpevekklkdgkvkciampapavryalgdafgm
pvgsvttgkmlaalqklgfahcwdteftadvtiweegsefverltkksdmplpqftsccp
gwqkyaetyypellphfstckspigmngalaktygaermkydpkqvytvsimpciakkye
glrpelkssgmrdidatlttrelaymikkagidfaklpdgkrdslmgestggatifgvtg
gvmeaalrfayeavtgkkpdswdfkavrgldgikeatvnvggtdvkvavvhgakrfkqvc
ddvkagkspyhfieymacpggcvcgggqpvmpgvleamdrtttrlyaglkkrlamasank
a

    Sequence, based on observed residues (ATOM records): (download) 
    >1hfeL (L:)
srtvmerieyemhtpdpkadpdklhfvqideakcigcdtcsqycptaaifgemgephsip
hieacincgqclthcpenaiyeaqswvpevekklkdgkvkciampapavryalgdafgmp
vgsvttgkmlaalqklgfahcwdteftadvtiweegsefverltkksdmplpqftsccpg
wqkyaetyypellphfstckspigmngalaktygaermkydpkqvytvsimpciakkyeg
lrpelkssgmrdidatlttrelaymikkagidfaklpdgkrdslmgestggatifgvtgg
vmeaalrfayeavtgkkpdswdfkavrgldgikeatvnvggtdvkvavvhgakrfkqvcd
dvkagkspyhfieymacpggcvcgggqpvmpgvleam

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1hfeM (M:)
msrtvmerieyemhtpdpkadpdklhfvqideakcigcdtcsqycptaaifgemgephsi
phieacincgqclthcpenaiyeaqswvpevekklkdgkvkciampapavryalgdafgm
pvgsvttgkmlaalqklgfahcwdteftadvtiweegsefverltkksdmplpqftsccp
gwqkyaetyypellphfstckspigmngalaktygaermkydpkqvytvsimpciakkye
glrpelkssgmrdidatlttrelaymikkagidfaklpdgkrdslmgestggatifgvtg
gvmeaalrfayeavtgkkpdswdfkavrgldgikeatvnvggtdvkvavvhgakrfkqvc
ddvkagkspyhfieymacpggcvcgggqpvmpgvleamdrtttrlyaglkkrlamasank
a

    Sequence, based on observed residues (ATOM records): (download) 
    >1hfeM (M:)
srtvmerieyemhtpdpkadpdklhfvqideakcigcdtcsqycptaaifgemgephsip
hieacincgqclthcpenaiyeaqswvpevekklkdgkvkciampapavryalgdafgmp
vgsvttgkmlaalqklgfahcwdteftadvtiweegsefverltkksdmplpqftsccpg
wqkyaetyypellphfstckspigmngalaktygaermkydpkqvytvsimpciakkyeg
lrpelkssgmrdidatlttrelaymikkagidfaklpdgkrdslmgestggatifgvtgg
vmeaalrfayeavtgkkpdswdfkavrgldgikeatvnvggtdvkvavvhgakrfkqvcd
dvkagkspyhfieymacpggcvcgggqpvmpgvleam

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >1hfeS (S:)
mqiasitrrgflkvacvttgaaligirmtgkavaavkqikdymldringvygadakfpvr
asqdntqvkalyksylekplghkshdllhthwfdkskgvkelttagklpnprasefegpy
pye

    Sequence, based on observed residues (ATOM records): (download) 
    >1hfeS (S:)
vkqikdymldringvygadakfpvrasqdntqvkalyksylekplghkshdllhthwfdk
skgvkelttagklpnprasefegpypye

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1hfeT (T:)
mqiasitrrgflkvacvttgaaligirmtgkavaavkqikdymldringvygadakfpvr
asqdntqvkalyksylekplghkshdllhthwfdkskgvkelttagklpnprasefegpy
pye

    Sequence, based on observed residues (ATOM records): (download) 
    >1hfeT (T:)
vkqikdymldringvygadakfpvrasqdntqvkalyksylekplghkshdllhthwfdk
skgvkelttagklpnprasefegpypye