SCOPe 2.02: Protein: Cucumovirus coat protein

Lineage for Protein: Cucumovirus coat protein

Root: SCOPe 2.02
Class b: All beta proteins [48724] (174 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)
Family b.121.4.5: Bromoviridae-like VP [88639] (2 proteins)
Protein Cucumovirus coat protein [88640] (4 species)

Species:

BMV (Brome mosaic virus) [TaxId:12302] [74886] (2 PDB entries)
1. Domains for 1js9:
  1. Domain d1js9a_: 1js9 A: [71840]
    complexed with edo, mg
  2. Domain d1js9b_: 1js9 B: [71841]
    complexed with edo, mg
  3. Domain d1js9c_: 1js9 C: [71842]
    complexed with edo, mg
2. Domains for 1yc6:
  1. Domain d1yc611: 1yc6 1:36-189 [122911]
    automatically matched to d1js9b_
  2. Domain d1yc621: 1yc6 2:36-189 [122912]
    automatically matched to d1js9b_
  3. Domain d1yc631: 1yc6 3:36-189 [122913]
    automatically matched to d1js9b_
  4. Domain d1yc641: 1yc6 4:36-189 [122914]
    automatically matched to d1js9b_
  5. Domain d1yc6a1: 1yc6 A:36-189 [122915]
    automatically matched to d1js9b_
  6. Domain d1yc6b1: 1yc6 B:36-189 [122916]
    automatically matched to d1js9b_
  7. Domain d1yc6c1: 1yc6 C:36-189 [122917]
    automatically matched to d1js9b_
  8. Domain d1yc6d1: 1yc6 D:36-189 [122918]
    automatically matched to d1js9b_
  9. Domain d1yc6e1: 1yc6 E:36-189 [122919]
    automatically matched to d1js9b_
  10. Domain d1yc6f1: 1yc6 F:36-189 [122920]
    automatically matched to d1js9b_
  11. Domain d1yc6g1: 1yc6 G:36-189 [122921]
    automatically matched to d1js9b_
  12. Domain d1yc6h1: 1yc6 H:36-189 [122922]
    automatically matched to d1js9b_
  13. Domain d1yc6i1: 1yc6 I:36-189 [122923]
    automatically matched to d1js9b_
  14. Domain d1yc6j1: 1yc6 J:36-189 [122924]
    automatically matched to d1js9b_
  15. Domain d1yc6k1: 1yc6 K:36-189 [122925]
    automatically matched to d1js9b_
  16. Domain d1yc6l1: 1yc6 L:36-189 [122926]
    automatically matched to d1js9b_
  17. Domain d1yc6m1: 1yc6 M:36-189 [122927]
    automatically matched to d1js9b_
  18. Domain d1yc6n1: 1yc6 N:36-189 [122928]
    automatically matched to d1js9b_
  19. Domain d1yc6o1: 1yc6 O:36-189 [122929]
    automatically matched to d1js9b_
  20. Domain d1yc6p1: 1yc6 P:36-189 [122930]
    automatically matched to d1js9b_
  21. Domain d1yc6q1: 1yc6 Q:36-189 [122931]
    automatically matched to d1js9b_
  22. Domain d1yc6r1: 1yc6 R:36-189 [122932]
    automatically matched to d1js9b_
  23. Domain d1yc6s1: 1yc6 S:36-189 [122933]
    automatically matched to d1js9b_
  24. Domain d1yc6t1: 1yc6 T:36-189 [122934]
    automatically matched to d1js9b_
  25. Domain d1yc6u1: 1yc6 U:36-189 [122935]
    automatically matched to d1js9b_
  26. Domain d1yc6v1: 1yc6 V:36-189 [122936]
    automatically matched to d1js9b_
  27. Domain d1yc6w1: 1yc6 W:36-189 [122937]
    automatically matched to d1js9b_
  28. Domain d1yc6x1: 1yc6 X:36-189 [122938]
    automatically matched to d1js9b_
  29. Domain d1yc6y1: 1yc6 Y:36-189 [122939]
    automatically matched to d1js9b_
  30. Domain d1yc6z1: 1yc6 Z:36-189 [122940]
    automatically matched to d1js9b_
CMV (Cucumber mosaic virus), strain fny [TaxId:12305] [49646] (1 PDB entry)
- Domains for 1f15:
  1. Domain d1f15a_: 1f15 A: [23320]
  2. Domain d1f15b_: 1f15 B: [23321]
  3. Domain d1f15c_: 1f15 C: [23322]
Cowpea chlorotic mottle virus [TaxId:12303] [49636] (1 PDB entry)
- Domains for 1cwp:
  1. Domain d1cwpa_: 1cwp A: [23305]
    protein/RNA complex
  2. Domain d1cwpb_: 1cwp B: [23306]
    protein/RNA complex
  3. Domain d1cwpc_: 1cwp C: [23307]
    protein/RNA complex
TAV (Tomato aspermy virus) [TaxId:12315] [82012] (1 PDB entry)
- Domains for 1laj:
  1. Domain d1laja_: 1laj A: [77865]
    protein/RNA complex; complexed with mg, po4
  2. Domain d1lajb_: 1laj B: [77866]
    protein/RNA complex; complexed with mg, po4
  3. Domain d1lajc_: 1laj C: [77867]
    protein/RNA complex; complexed with mg, po4

More info for Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP

Timeline for Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP:

Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP first appeared in SCOP 1.65
Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP appears in SCOPe 2.01
Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP appears in SCOPe 2.03
Protein Cucumovirus coat protein from b.121.4.5: Bromoviridae-like VP appears in the current release, SCOPe 2.08