SCOPe 2.08: Domain d1omib2: 1omi B:2138-2237

Lineage for d1omib2 (1omi B:2138-2237)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.4: CAP C-terminal domain-like [46796] (9 proteins)

6. Protein Listeriolysin regulatory protein PrfA, C-terminal domain [88975] (1 species)
7. Species Listeria monocytogenes [TaxId:1639] [88976] (1 PDB entry)

8. Domain d1omib2: 1omi B:2138-2237 [87082]
   Other proteins in same PDB: d1omia1, d1omia3, d1omib1, d1omib3
   complexed with gol

Details for d1omib2

PDB Entry: 1omi, 2.8 Å

PDB Description: crystal structure of prfa,the transcriptional regulator in listeria monocytogenes

PDB Compounds: (B:) listeriolysin regulatory protein

SCOPe Domain Sequences for d1omib2:

Sequence, based on SEQRES records:

>d1omib2 a.4.5.4 (B:2138-2237) Listeriolysin regulatory protein PrfA, C-terminal domain {Listeria monocytogenes [TaxId: 1639]}
gklgsicgqlliltyvygketpdgikitldnltmqelgyssgiahssavsriisklkqek
vivyknscfyvqnldylkryapkldewfylacpatwgkln

Sequence, based on observed residues (ATOM records):

>d1omib2 a.4.5.4 (B:2138-2237) Listeriolysin regulatory protein PrfA, C-terminal domain {Listeria monocytogenes [TaxId: 1639]}
gklgsicgqlliltyvygketpdgikitldnltmqelgyssavsriisklkqekvivykn
scfyvqnldylkryapkldewfylacpatwgkln

Timeline for d1omib2:

• d1omib2 first appeared in SCOP 1.65
  
• d1omib2 appears in SCOPe 2.07