Lineage for Family c.67.1.4: GABA-aminotransferase-like

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
    formerly omega-Aminoacid:pyruvate aminotransferase-like

Proteins:

  1. 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) [53440] (2 species)
    1. Species Apple (Malus domestica) [TaxId:3750] [53441] (5 PDB entries)
    2. Species Tomato (Lycopersicon esculentum) [TaxId:4081] [64130] (2 PDB entries)
  2. 2-amino-3-ketobutyrate CoA ligase [64128] (1 species)
  3. 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) [53434] (1 species)
  4. 4-aminobutyrate aminotransferase, GABA-aminotransferase [53424] (2 species)
    1. Species Escherichia coli [TaxId:562] [110686] (5 PDB entries)
      Uniprot P22256
    2. Species Pig (Sus scrofa) [TaxId:9823] [53425] (9 PDB entries)
  5. 5-aminolevulinate synthase [142676] (1 species)
  6. Acetylornithine/acetyl-lysine aminotransferase ArgD [142674] (1 species)
  7. Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA [53438] (2 species)
    synonym: 7,8-diaminopelargonic acid synthase
    1. Species Bacillus subtilis [TaxId:1423] [188929] (2 PDB entries)
    2. Species Escherichia coli [TaxId:562] [53439] (11 PDB entries)
  8. Aminotransferase ArnB [82488] (1 species)
    4-amino-4-deoxy-L-arabinose liposaccharide modifying enzyme
  9. Aminotransferase homolog WlaK (PglE, Cj1121c) [102603] (1 species)
  10. Dialkylglycine decarboxylase [53418] (1 species)
  11. Glutamate-1-semialdehyde aminomutase (aminotransferase) [53420] (2 species)
    1. Species Synechococcus elongatus [TaxId:32046] [142669] (1 PDB entry)
      Uniprot Q8DLK8 45-437
    2. Species Synechococcus sp., strain GR6 [TaxId:1131] [53421] (3 PDB entries)
  12. Ornithine aminotransferase [53422] (3 species)
    1. Species Human (Homo sapiens) [TaxId:9606] [53423] (11 PDB entries)
    2. Species Plasmodium falciparum [TaxId:5836] [189413] (1 PDB entry)
    3. Species Plasmodium yoelii yoelii [TaxId:73239] [142670] (1 PDB entry)
      Uniprot Q7RT90 7-410
  13. Phosphoserine aminotransferase, PSAT [53426] (3 species)
    1. Species Bacillus alcalophilus [TaxId:1445] [117697] (12 PDB entries)
      Uniprot Q9RME2
    2. Species Bacillus circulans, subsp. alkalophilus [TaxId:1397] [53427] (3 PDB entries)
      Uniprot Q59196
    3. Species Escherichia coli [TaxId:562] [53428] (2 PDB entries)
  14. PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) [53436] (1 species)
  15. Serine hydroxymethyltransferase [53429] (7 species)
    1. Species Bacillus stearothermophilus [TaxId:1422] [75272] (39 PDB entries)
    2. Species Escherichia coli [TaxId:562] [53433] (2 PDB entries)
    3. Species Soybean (Glycine max) [TaxId:3847] [380557] (5 PDB entries)
    4. Species Human (Homo sapiens) [TaxId:9606] [53432] (2 PDB entries)
    5. Species Human (Homo sapiens), mitochondrial [TaxId:9606] [142671] (8 PDB entries)
      Uniprot P34897 42-504
    6. Species Mouse (Mus musculus) [TaxId:10090] [53431] (1 PDB entry)
    7. Species Rabbit (Oryctolagus cuniculus) [TaxId:9986] [53430] (6 PDB entries)
      Uniprot P07511
  16. Spore coat polysaccharide biosynthesis protein C [142672] (1 species)
  17. automated matches [190152] (25 species)
    not a true protein
    1. Species Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)
    2. Species Aphanothece halophytica [TaxId:72020] [387036] (3 PDB entries)
    3. Species Bacillus anthracis [TaxId:261594] [189189] (1 PDB entry)
    4. Species Bacillus subtilis [TaxId:1423] [188688] (2 PDB entries)
    5. Species Burkholderia cenocepacia [TaxId:216591] [229698] (4 PDB entries)
    6. Species Burkholderia cepacia [TaxId:292] [186906] (3 PDB entries)
    7. Species Campylobacter jejuni [TaxId:197] [275525] (1 PDB entry)
    8. Species Citrobacter rodentium [TaxId:97825] [329042] (1 PDB entry)
    9. Species Coxiella burnetii [TaxId:227377] [193632] (1 PDB entry)
    10. Species Escherichia coli [TaxId:562] [187107] (2 PDB entries)
    11. Species Human (Homo sapiens) [TaxId:9606] [255069] (1 PDB entry)
    12. Species Medicago truncatula [TaxId:3880] [352361] (3 PDB entries)
    13. Species Plasmodium falciparum [TaxId:36329] [255985] (1 PDB entry)
    14. Species Rhodobacter capsulatus [TaxId:1061] [187497] (3 PDB entries)
    15. Species Salmonella enterica [TaxId:90371] [237706] (1 PDB entry)
    16. Species Salmonella typhimurium [TaxId:90371] [188804] (1 PDB entry)
    17. Species Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)
    18. Species Streptococcus thermophilus [TaxId:1308] [383816] (1 PDB entry)
    19. Species Streptococcus thermophilus [TaxId:299768] [270038] (8 PDB entries)
    20. Species Synechococcus elongatus [TaxId:1140] [193337] (1 PDB entry)
    21. Species Synechococcus elongatus [TaxId:269084] [187818] (8 PDB entries)
    22. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [318454] (4 PDB entries)
    23. Species Thermus thermophilus HB8 [TaxId:300852] [187623] (1 PDB entry)
    24. Species Wild boar (Sus scrofa) [311140] (1 PDB entry)
    25. Species Yersinia pestis [TaxId:214092] [189635] (1 PDB entry)

More info for Family c.67.1.4: GABA-aminotransferase-like

Timeline for Family c.67.1.4: GABA-aminotransferase-like: