SCOPe 2.08: Protein: Ornithine aminotransferase

Lineage for Protein: Ornithine aminotransferase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)
Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
formerly omega-Aminoacid:pyruvate aminotransferase-like
Protein Ornithine aminotransferase [53422] (3 species)

Species:

Human (Homo sapiens) [TaxId:9606] [53423] (11 PDB entries)
1. Domains for 1gbn:
  1. Domain d1gbna_: 1gbn A: [34455]
    complexed with gab, gbc
  2. Domain d1gbnb_: 1gbn B: [34456]
    complexed with gab, gbc
  3. Domain d1gbnc_: 1gbn C: [34457]
    complexed with gab, gbc
2. Domains for 1oat:
  1. Domain d1oata_: 1oat A: [34461]
    complexed with plp
  2. Domain d1oatb_: 1oat B: [34462]
    complexed with plp
  3. Domain d1oatc_: 1oat C: [34463]
    complexed with plp
3. Domain for 2byj:
  - Domain d2byja1: 2byj A:36-439 [129483]
    Other proteins in same PDB: d2byjb_, d2byjc_
    complexed with plp; mutant
4. Domains for 2byl:
  1. Domain d2byla1: 2byl A:36-439 [129490]
    complexed with plp; mutant
  2. Domain d2bylb_: 2byl B: [129491]
    automated match to d2byla1
    complexed with plp; mutant
  3. Domain d2bylc_: 2byl C: [129492]
    automated match to d2byla1
    complexed with plp; mutant
5. Domains for 2can:
  1. Domain d2cana_: 2can A: [34458]
    complexed with can
  2. Domain d2canb_: 2can B: [34459]
    complexed with can
  3. Domain d2canc_: 2can C: [34460]
    complexed with can
6. Domains for 2oat:
  1. Domain d2oata_: 2oat A: [34452]
    complexed with pfm
  2. Domain d2oatb_: 2oat B: [34453]
    complexed with pfm
  3. Domain d2oatc_: 2oat C: [34454]
    complexed with pfm
7. Domains for 5vwo:
  1. Domain d5vwoa_: 5vwo A: [338751]
    automated match to d2byja1
    complexed with 9qj
  2. Domain d5vwob_: 5vwo B: [338753]
    automated match to d2byja1
    complexed with 9qj
  3. Domain d5vwoc_: 5vwo C: [338738]
    automated match to d2byja1
    complexed with 9qj
8. Domains for 6oia:
  1. Domain d6oiaa_: 6oia A: [374289]
    automated match to d2byja1
    complexed with gol, mq4, plp
  2. Domain d6oiab_: 6oia B: [374288]
    automated match to d2byja1
    complexed with gol, mq4, plp
  3. Domain d6oiac_: 6oia C: [374276]
    automated match to d2byja1
    complexed with gol, mq4, plp
9. Domains for 6v8c:
  1. Domain d6v8ca_: 6v8c A: [397812]
    automated match to d2byja1
    complexed with plp, qrm
  2. Domain d6v8cb_: 6v8c B: [397855]
    automated match to d2byja1
    complexed with plp, qrm
  3. Domain d6v8cc_: 6v8c C: [397815]
    automated match to d2byja1
    complexed with plp, qrm
10. Domains for 6v8d:
  1. Domain d6v8da_: 6v8d A: [397763]
    automated match to d2byja1
    complexed with o78, plp
  2. Domain d6v8db_: 6v8d B: [397739]
    automated match to d2byja1
    complexed with o78, plp
  3. Domain d6v8dc_: 6v8d C: [397883]
    automated match to d2byja1
    complexed with o78, plp
11. Domains for 7jx9:
  1. Domain d7jx9a_: 7jx9 A: [397068]
    automated match to d2byja1
    complexed with if1, vls
  2. Domain d7jx9b_: 7jx9 B: [397034]
    automated match to d2byja1
    complexed with if1, vls
  3. Domain d7jx9c_: 7jx9 C: [396993]
    automated match to d2byja1
    complexed with if1, vls
Plasmodium falciparum [TaxId:5836] [189413] (1 PDB entry)
- Domains for 3lg0:
  1. Domain d3lg0a_: 3lg0 A: [180265]
    automated match to d1z7da1
  2. Domain d3lg0b_: 3lg0 B: [180266]
    automated match to d1z7da1
  3. Domain d3lg0c_: 3lg0 C: [180267]
    automated match to d1z7da1
  4. Domain d3lg0d_: 3lg0 D: [180268]
    automated match to d1z7da1
Plasmodium yoelii yoelii [TaxId:73239] [142670] (1 PDB entry)
Uniprot Q7RT90 7-410
- Domains for 1z7d:
  1. Domain d1z7da1: 1z7d A:7-410 [124600]
  2. Domain d1z7db_: 1z7d B: [124601]
    automated match to d1z7da1
  3. Domain d1z7dc_: 1z7d C: [124602]
    automated match to d1z7da1
  4. Domain d1z7dd_: 1z7d D: [124603]
    automated match to d1z7da1
  5. Domain d1z7de_: 1z7d E: [124604]
    automated match to d1z7da1
  6. Domain d1z7df_: 1z7d F: [124605]
    automated match to d1z7da1

More info for Protein Ornithine aminotransferase from c.67.1.4: GABA-aminotransferase-like

Timeline for Protein Ornithine aminotransferase from c.67.1.4: GABA-aminotransferase-like:

Protein Ornithine aminotransferase from c.67.1.4: GABA-aminotransferase-like first appeared (with stable ids) in SCOP 1.55, called Protein Ornithine aminotransferase from c.67.1.4: omega-Amino acid:pyruvate aminotransferase-like
Protein Ornithine aminotransferase from c.67.1.4: GABA-aminotransferase-like appears in SCOPe 2.07