Lineage for Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2895166Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2895167Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2896011Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
    formerly omega-Aminoacid:pyruvate aminotransferase-like
  6. 2896366Protein automated matches [190152] (25 species)
    not a true protein
  7. 2896508Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [318454] (6 PDB entries)

PDB entries in Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]:

  1. Domain(s) for 5hdm:
    1. 2896509Domain d5hdma_: 5hdm A: [318455]
      automated match to d2gsaa_
      complexed with plp, pmp
    2. 2896510Domain d5hdmb_: 5hdm B: [318491]
      automated match to d2gsaa_
      complexed with plp, pmp
  2. Domain(s) for 6smn:
    1. 2896515Domain d6smna_: 6smn A: [378848]
      Other proteins in same PDB: d6smnd2
      automated match to d1ejia_
      complexed with edo, mtx, pls, ser
    2. 2896516Domain d6smnb_: 6smn B: [378888]
      Other proteins in same PDB: d6smnd2
      automated match to d1ejia_
      complexed with edo, mtx, pls, ser
    3. 2896517Domain d6smnc_: 6smn C: [378846]
      Other proteins in same PDB: d6smnd2
      automated match to d1ejia_
      complexed with edo, mtx, pls, ser
    4. 2896518Domain d6smnd1: 6smn D:41-517 [378849]
      Other proteins in same PDB: d6smnd2
      automated match to d1ejia_
      complexed with edo, mtx, pls, ser
  3. Domain(s) for 6smr:
    1. 2896519Domain d6smra1: 6smr A:1-470 [378844]
      Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
      automated match to d5v7ia_
      complexed with edo, mtx, pls, trs
    2. 2896520Domain d6smrb1: 6smr B:1-471 [378837]
      Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
      automated match to d5v7ia_
      complexed with edo, mtx, pls, trs
    3. 2896521Domain d6smrc1: 6smr C:1-470 [378839]
      Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
      automated match to d5v7ia_
      complexed with edo, mtx, pls, trs
    4. 2896522Domain d6smrd1: 6smr D:1-470 [378895]
      Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
      automated match to d5v7ia_
      complexed with edo, mtx, pls, trs
  4. Domain(s) for 6smw:
    1. 2896511Domain d6smwa_: 6smw A: [378840]
      Other proteins in same PDB: d6smwd2
      automated match to d1ejia_
      complexed with edo, lya, plp, pls, ser
    2. 2896512Domain d6smwb_: 6smw B: [378851]
      Other proteins in same PDB: d6smwd2
      automated match to d1ejia_
      complexed with edo, lya, plp, pls, ser
    3. 2896513Domain d6smwc_: 6smw C: [378847]
      Other proteins in same PDB: d6smwd2
      automated match to d1ejia_
      complexed with edo, lya, plp, pls, ser
    4. 2896514Domain d6smwd1: 6smw D:41-517 [378842]
      Other proteins in same PDB: d6smwd2
      automated match to d1ejia_
      complexed with edo, lya, plp, pls, ser
  5. Domain(s) for 7dlw:
    1. 3084890Domain d7dlwc_: 7dlw C: [421207]
      automated match to d1m4na_
      complexed with ppg, so4
    2. 3084891Domain d7dlwd_: 7dlw D: [421208]
      automated match to d1m4na_
      complexed with ppg, so4
    3. 3084935Domain d7dlwa_: 7dlw A: [421252]
      automated match to d1m4na_
      complexed with ppg, so4
    4. 3084947Domain d7dlwb_: 7dlw B: [421264]
      automated match to d1m4na_
      complexed with ppg, so4
  6. Domain(s) for 7dly:
    1. 3084944Domain d7dlyb_: 7dly B: [421261]
      automated match to d1m7ya_
      complexed with ppg; mutant
    2. 3085020Domain d7dlya_: 7dly A: [421337]
      automated match to d1m7ya_
      complexed with ppg; mutant

More info for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from c.67.1.4 automated matches

Timeline for Species Thale cress (Arabidopsis thaliana) [TaxId:3702] from c.67.1.4 automated matches: