Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2895166Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2895167Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2896011Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
    formerly omega-Aminoacid:pyruvate aminotransferase-like
  6. 2896366Protein automated matches [190152] (25 species)
    not a true protein

Species:

  1. 2896367Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)
  2. 2896369Aphanothece halophytica [TaxId:72020] [387036] (3 PDB entries)
    1. Domains for 6ymd:
      1. 2896370Domain d6ymda_: 6ymd A: [387090]
        automated match to d3pgya_
        complexed with edo, mli, na, pmp
      2. 2896371Domain d6ymdb_: 6ymd B: [387037]
        automated match to d3pgya_
        complexed with edo, mli, na, pmp
    2. Domain for 6yme:
    3. Domain for 6ymf:
  3. 2896374Bacillus anthracis [TaxId:261594] [189189] (1 PDB entry)
  4. 2896379Bacillus subtilis [TaxId:1423] [188688] (2 PDB entries)
    1. Domain for 3bs8:
    2. Domains for 6wnn:
      1. 2896381Domain d6wnna_: 6wnn A: [404006]
        automated match to d3drda_
        complexed with llp, pmp
      2. 2896382Domain d6wnnb_: 6wnn B: [404018]
        automated match to d3drda_
        complexed with llp, pmp
  5. 2896383Burkholderia cenocepacia [TaxId:216591] [229698] (4 PDB entries)
    1. Domains for 4mso:
      1. 2896384Domain d4msoa_: 4mso A: [229699]
        automated match to d3gbxa_
        complexed with edo, po4
      2. 2896385Domain d4msob_: 4mso B: [229700]
        automated match to d3gbxa_
        complexed with edo, po4
    2. Domains for 4n0w:
      1. 2896386Domain d4n0wa1: 4n0w A:1-415 [235713]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      2. 2896387Domain d4n0wb_: 4n0w B: [235714]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      3. 2896388Domain d4n0wc_: 4n0w C: [229707]
        Other proteins in same PDB: d4n0wa2
        automated match to d3gbxa_
        complexed with plp, so4
      4. 2896389Domain d4n0wd_: 4n0w D: [235715]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
    3. Domains for 4ot8:
      1. 2896390Domain d4ot8a_: 4ot8 A: [257323]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      2. 2896391Domain d4ot8b_: 4ot8 B: [263342]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      3. 2896392Domain d4ot8c1: 4ot8 C:1-414 [263343]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      4. 2896393Domain d4ot8d_: 4ot8 D: [263344]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
    4. Domains for 4otl:
      1. 2896394Domain d4otla_: 4otl A: [267133]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      2. 2896395Domain d4otlb_: 4otl B: [267134]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      3. 2896396Domain d4otlc_: 4otl C: [267135]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      4. 2896397Domain d4otld1: 4otl D:1-415 [267136]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
  6. 2896398Burkholderia cepacia [TaxId:292] [186906] (3 PDB entries)
    1. Domain for 1zc9:
    2. Domain for 1zob:
    3. Domain for 1zod:
  7. 2896402Campylobacter jejuni [TaxId:197] [275525] (1 PDB entry)
  8. 2896404Citrobacter rodentium [TaxId:97825] [329042] (1 PDB entry)
  9. 2896406Coxiella burnetii [TaxId:227377] [193632] (1 PDB entry)
  10. 2896409Escherichia coli [TaxId:562] [187107] (2 PDB entries)
    1. Domain for 2g6w:
    2. Domains for 6ed7:
      1. 2896411Domain d6ed7a1: 6ed7 A:2-429 [373133]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      2. 2896412Domain d6ed7b1: 6ed7 B:2-429 [373091]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      3. 2896413Domain d6ed7c1: 6ed7 C:2-429 [373101]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      4. 2896414Domain d6ed7d1: 6ed7 D:2-429 [373138]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      5. 2896415Domain d6ed7e1: 6ed7 E:2-429 [373095]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      6. 2896416Domain d6ed7f1: 6ed7 F:2-429 [373117]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      7. 2896417Domain d6ed7g1: 6ed7 G:2-429 [373104]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
      8. 2896418Domain d6ed7h1: 6ed7 H:2-429 [373324]
        Other proteins in same PDB: d6ed7a2, d6ed7b2, d6ed7c2, d6ed7d2, d6ed7e2, d6ed7f2, d6ed7g2, d6ed7h2
        automated match to d1qj5a_
        complexed with j4j, plp
  11. 2896419Human (Homo sapiens) [TaxId:9606] [255069] (1 PDB entry)
  12. 2896422Medicago truncatula [TaxId:3880] [352361] (3 PDB entries)
    1. Domains for 6ccz:
      1. 2896435Domain d6ccza_: 6ccz A: [352387]
        automated match to d1bj4a_
        complexed with act, fmt, sey
      2. 2896436Domain d6cczb_: 6ccz B: [352413]
        automated match to d1bj4a_
        complexed with act, fmt, sey
    2. Domains for 6cd0:
      1. 2896423Domain d6cd0a_: 6cd0 A: [352374]
        automated match to d1bj4a_
        complexed with act, fmt
      2. 2896424Domain d6cd0b_: 6cd0 B: [352377]
        automated match to d1bj4a_
        complexed with act, fmt
      3. 2896425Domain d6cd0c_: 6cd0 C: [352480]
        automated match to d1bj4a_
        complexed with act, fmt
      4. 2896426Domain d6cd0d_: 6cd0 D: [352367]
        automated match to d1bj4a_
        complexed with act, fmt
    3. Domains for 6cd1:
      1. 2896427Domain d6cd1a_: 6cd1 A: [352366]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      2. 2896428Domain d6cd1b_: 6cd1 B: [352365]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      3. 2896429Domain d6cd1c_: 6cd1 C: [352368]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      4. 2896430Domain d6cd1d_: 6cd1 D: [352370]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      5. 2896431Domain d6cd1e_: 6cd1 E: [352496]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      6. 2896432Domain d6cd1f_: 6cd1 F: [352375]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      7. 2896433Domain d6cd1g_: 6cd1 G: [352371]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
      8. 2896434Domain d6cd1h_: 6cd1 H: [352376]
        automated match to d1bj4a_
        complexed with act, edo, gly, plg, pls
  13. 2896437Plasmodium falciparum [TaxId:36329] [255985] (1 PDB entry)
  14. 2896442Rhodobacter capsulatus [TaxId:1061] [187497] (3 PDB entries)
    1. Domains for 2bwn:
      1. 2896447Domain d2bwnb_: 2bwn B: [129369]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      2. 2896448Domain d2bwnd_: 2bwn D: [129370]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      3. 2896449Domain d2bwne_: 2bwn E: [129371]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
    2. Domains for 2bwo:
      1. 2896450Domain d2bwoa_: 2bwo A: [129372]
        automated match to d2bwna1
        complexed with plp, sca
      2. 2896451Domain d2bwob_: 2bwo B: [129373]
        automated match to d2bwna1
        complexed with plp, sca
      3. 2896452Domain d2bwod_: 2bwo D: [129374]
        automated match to d2bwna1
        complexed with plp, sca
      4. 2896453Domain d2bwoe_: 2bwo E: [129375]
        automated match to d2bwna1
        complexed with plp, sca
    3. Domains for 2bwp:
      1. 2896443Domain d2bwpa_: 2bwp A: [129376]
        automated match to d2bwna1
        complexed with acy, plg
      2. 2896444Domain d2bwpb_: 2bwp B: [129377]
        automated match to d2bwna1
        complexed with acy, plg
      3. 2896445Domain d2bwpd_: 2bwp D: [129378]
        automated match to d2bwna1
        complexed with acy, plg
      4. 2896446Domain d2bwpe_: 2bwp E: [129379]
        automated match to d2bwna1
        complexed with acy, plg
  15. 2896454Salmonella enterica [TaxId:90371] [237706] (1 PDB entry)
  16. 2896456Salmonella typhimurium [TaxId:90371] [188804] (1 PDB entry)
  17. 2896459Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)
  18. 2896464Streptococcus thermophilus [TaxId:1308] [383816] (1 PDB entry)
  19. 2896466Streptococcus thermophilus [TaxId:299768] [270038] (8 PDB entries)
    1. Domains for 4wxb:
      1. 2896476Domain d4wxba_: 4wxb A: [270046]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      2. 2896477Domain d4wxbb_: 4wxb B: [270042]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      3. 2896478Domain d4wxbc_: 4wxb C: [270043]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      4. 2896479Domain d4wxbd_: 4wxb D: [270045]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
    2. Domains for 4wxf:
      1. 2896484Domain d4wxfa_: 4wxf A: [270041]
        automated match to d1dfoa_
        complexed with gol, plg
      2. 2896485Domain d4wxfc_: 4wxf C: [270044]
        automated match to d1dfoa_
        complexed with gol, plg
    3. Domains for 4wxg:
      1. 2896472Domain d4wxga_: 4wxg A: [270039]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
      2. 2896473Domain d4wxgc_: 4wxg C: [270040]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
    4. Domains for 6tgh:
      1. 2896480Domain d6tgha_: 6tgh A: [387046]
        automated match to d4wxga_
        complexed with dsn, evm, na, plp
      2. 2896481Domain d6tghb_: 6tgh B: [386997]
        automated match to d4wxga_
        complexed with dsn, evm, na, plp
      3. 2896482Domain d6tghc_: 6tgh C: [387056]
        automated match to d4wxga_
        complexed with dsn, evm, na, plp
      4. 2896483Domain d6tghd_: 6tgh D: [386895]
        automated match to d4wxga_
        complexed with dsn, evm, na, plp
    5. Domains for 6ti1:
      1. 2896474Domain d6ti1a_: 6ti1 A: [384841]
        automated match to d4wxga_
        complexed with 2bo, gol, na
      2. 2896475Domain d6ti1c_: 6ti1 C: [384843]
        automated match to d4wxga_
        complexed with 2bo, gol, na
    6. Domains for 6ti3:
      1. 2896468Domain d6ti3a_: 6ti3 A: [384844]
        automated match to d4wxga_
        complexed with dth, gol, na
      2. 2896469Domain d6ti3b_: 6ti3 B: [384871]
        automated match to d4wxga_
        complexed with dth, gol, na
      3. 2896470Domain d6ti3c_: 6ti3 C: [384842]
        automated match to d4wxga_
        complexed with dth, gol, na
      4. 2896471Domain d6ti3d_: 6ti3 D: [384873]
        automated match to d4wxga_
        complexed with dth, gol, na
    7. Domain for 6ti4:
    8. Domains for 6yrw:
      1. 2896486Domain d6yrwa_: 6yrw A: [387102]
        automated match to d4wxga_
        complexed with dsn, gol, plp
      2. 2896487Domain d6yrwb_: 6yrw B: [387110]
        automated match to d4wxga_
        complexed with dsn, gol, plp
      3. 2896488Domain d6yrwc_: 6yrw C: [387019]
        automated match to d4wxga_
        complexed with dsn, gol, plp
      4. 2896489Domain d6yrwd_: 6yrw D: [387086]
        automated match to d4wxga_
        complexed with dsn, gol, plp
  20. 2896490Synechococcus elongatus [TaxId:1140] [193337] (1 PDB entry)
  21. 2896492Synechococcus elongatus [TaxId:269084] [187818] (8 PDB entries)
    1. Domains for 2hoy:
      1. 2896501Domain d2hoya_: 2hoy A: [165183]
        automated match to d2gsaa_
        complexed with po4
      2. 2896502Domain d2hoyb_: 2hoy B: [165184]
        automated match to d2gsaa_
        complexed with po4
    2. Domains for 2hoz:
      1. 2896497Domain d2hoza_: 2hoz A: [165185]
        automated match to d2gsaa_
        complexed with hoz, pmp
      2. 2896498Domain d2hozb_: 2hoz B: [165186]
        automated match to d2gsaa_
        complexed with hoz, pmp
    3. Domains for 2hp1:
      1. 2896493Domain d2hp1a_: 2hp1 A: [165187]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
      2. 2896494Domain d2hp1b_: 2hp1 B: [165188]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
    4. Domains for 2hp2:
      1. 2896506Domain d2hp2a_: 2hp2 A: [165189]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
      2. 2896507Domain d2hp2b_: 2hp2 B: [165190]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
    5. Domains for 3fq7:
      1. 2896499Domain d3fq7a_: 3fq7 A: [175967]
        automated match to d2gsaa_
        complexed with pxg
      2. 2896500Domain d3fq7b_: 3fq7 B: [175968]
        automated match to d2gsaa_
        complexed with pxg
    6. Domains for 3fq8:
      1. 2896495Domain d3fq8a_: 3fq8 A: [175969]
        automated match to d2gsaa_
        complexed with pmp; mutant
      2. 2896496Domain d3fq8b_: 3fq8 B: [175970]
        automated match to d2gsaa_
        complexed with pmp; mutant
    7. Domains for 3fqa:
      1. 2896504Domain d3fqaa_: 3fqa A: [175971]
        automated match to d2gsaa_
        complexed with gab, pmp
      2. 2896505Domain d3fqab_: 3fqa B: [175972]
        automated match to d2gsaa_
        complexed with gab, pmp
    8. Domain for 3usf:
  22. 2896508Thale cress (Arabidopsis thaliana) [TaxId:3702] [318454] (6 PDB entries)
    1. Domains for 5hdm:
      1. 2896509Domain d5hdma_: 5hdm A: [318455]
        automated match to d2gsaa_
        complexed with plp, pmp
      2. 2896510Domain d5hdmb_: 5hdm B: [318491]
        automated match to d2gsaa_
        complexed with plp, pmp
    2. Domains for 6smn:
      1. 2896515Domain d6smna_: 6smn A: [378848]
        Other proteins in same PDB: d6smnd2
        automated match to d1ejia_
        complexed with edo, mtx, pls, ser
      2. 2896516Domain d6smnb_: 6smn B: [378888]
        Other proteins in same PDB: d6smnd2
        automated match to d1ejia_
        complexed with edo, mtx, pls, ser
      3. 2896517Domain d6smnc_: 6smn C: [378846]
        Other proteins in same PDB: d6smnd2
        automated match to d1ejia_
        complexed with edo, mtx, pls, ser
      4. 2896518Domain d6smnd1: 6smn D:41-517 [378849]
        Other proteins in same PDB: d6smnd2
        automated match to d1ejia_
        complexed with edo, mtx, pls, ser
    3. Domains for 6smr:
      1. 2896519Domain d6smra1: 6smr A:1-470 [378844]
        Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
        automated match to d5v7ia_
        complexed with edo, mtx, pls, trs
      2. 2896520Domain d6smrb1: 6smr B:1-471 [378837]
        Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
        automated match to d5v7ia_
        complexed with edo, mtx, pls, trs
      3. 2896521Domain d6smrc1: 6smr C:1-470 [378839]
        Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
        automated match to d5v7ia_
        complexed with edo, mtx, pls, trs
      4. 2896522Domain d6smrd1: 6smr D:1-470 [378895]
        Other proteins in same PDB: d6smra2, d6smrb2, d6smrc2, d6smrd2
        automated match to d5v7ia_
        complexed with edo, mtx, pls, trs
    4. Domains for 6smw:
      1. 2896511Domain d6smwa_: 6smw A: [378840]
        Other proteins in same PDB: d6smwd2
        automated match to d1ejia_
        complexed with edo, lya, plp, pls, ser
      2. 2896512Domain d6smwb_: 6smw B: [378851]
        Other proteins in same PDB: d6smwd2
        automated match to d1ejia_
        complexed with edo, lya, plp, pls, ser
      3. 2896513Domain d6smwc_: 6smw C: [378847]
        Other proteins in same PDB: d6smwd2
        automated match to d1ejia_
        complexed with edo, lya, plp, pls, ser
      4. 2896514Domain d6smwd1: 6smw D:41-517 [378842]
        Other proteins in same PDB: d6smwd2
        automated match to d1ejia_
        complexed with edo, lya, plp, pls, ser
    5. Domains for 7dlw:
      1. 3084890Domain d7dlwc_: 7dlw C: [421207]
        automated match to d1m4na_
        complexed with ppg, so4
      2. 3084891Domain d7dlwd_: 7dlw D: [421208]
        automated match to d1m4na_
        complexed with ppg, so4
      3. 3084935Domain d7dlwa_: 7dlw A: [421252]
        automated match to d1m4na_
        complexed with ppg, so4
      4. 3084947Domain d7dlwb_: 7dlw B: [421264]
        automated match to d1m4na_
        complexed with ppg, so4
    6. Domains for 7dly:
      1. 3084944Domain d7dlyb_: 7dly B: [421261]
        automated match to d1m7ya_
        complexed with ppg; mutant
      2. 3085020Domain d7dlya_: 7dly A: [421337]
        automated match to d1m7ya_
        complexed with ppg; mutant
  23. 2896523Thermus thermophilus HB8 [TaxId:300852] [187623] (1 PDB entry)
  24. 2896526Wild boar (Sus scrofa) [311140] (1 PDB entry)
  25. 2896531Yersinia pestis [TaxId:214092] [189635] (1 PDB entry)

More info for Protein automated matches from c.67.1.4: GABA-aminotransferase-like

Timeline for Protein automated matches from c.67.1.4: GABA-aminotransferase-like: