SCOPe 2.08: Domain d6gaba_: 6gab A:

Lineage for d6gaba_ (6gab A:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)

6. Protein Bacteriorhodopsin [56871] (3 species)
   a light-driven proton pump

7. Species Halobacterium salinarum [TaxId:2242] [56873] (118 PDB entries)
   Uniprot P02945 17-245

8. Domain d6gaba_: 6gab A: [368079]
   automated match to d1r2na_
   complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und

Details for d6gaba_

PDB Entry: 6gab, 1.8 Å

PDB Description: bacteriorhodopsin, 460 fs state, real-space refined against 15% extrapolated structure factors

PDB Compounds: (A:) bacteriorhodopsin

SCOPe Domain Sequences for d6gaba_:

Sequence; same for both SEQRES and ATOM records:

>d6gaba_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}
itgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllg
ygltmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtgl
vgaltkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlws
aypvvwligsegagivplnietllfmvldvsakvgfglillrsraifgeae

Timeline for d6gaba_:

• d6gaba_ first appeared in SCOPe 2.07