SCOPe 2.08: Protein: Bacteriorhodopsin

Lineage for Protein: Bacteriorhodopsin

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
Pfam PF13853. Phylogeny described in PubMed 12761335
Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
Protein Bacteriorhodopsin [56871] (3 species)
a light-driven proton pump

Species:

Halobacterium halobium [TaxId:2242] [56872] (3 PDB entries)
1. Domain for 1bm1:
  - Domain d1bm1a_: 1bm1 A: [43402]
    complexed with dpg, ret
2. Domain for 1brd:
  - Domain d1brda_: 1brd A: [43404]
    complexed with ret
3. Domain for 2brd:
  - Domain d2brda_: 2brd A: [43403]
    complexed with dpg, ret
Halobacterium salinarum [TaxId:2242] [56873] (118 PDB entries)
Uniprot P02945 17-245
1. Domain for 1ap9:
  - Domain d1ap9a_: 1ap9 A: [43418]
    complexed with ret
2. Domain for 1at9:
  - Domain d1at9a_: 1at9 A: [43424]
    complexed with ret
3. Domains for 1brr:
  1. Domain d1brra_: 1brr A: [43421]
    complexed with arc, bgc, gol, oct, ret
  2. Domain d1brrb_: 1brr B: [43422]
    complexed with arc, bgc, gol, oct, ret
  3. Domain d1brrc_: 1brr C: [43423]
    complexed with arc, bgc, gol, oct, ret
4. Domain for 1brx:
  - Domain d1brxa_: 1brx A: [43415]
    complexed with ret
5. Domain for 1c3w:
  - Domain d1c3wa_: 1c3w A: [43405]
    complexed with li1, ret, squ
6. Domain for 1c8r:
  - Domain d1c8ra_: 1c8r A: [43407]
    complexed with li1, ret, squ
7. Domain for 1c8s:
  - Domain d1c8sa_: 1c8s A: [43410]
    complexed with li1, ret, squ
8. Domains for 1cwq:
  1. Domain d1cwqa_: 1cwq A: [43412]
    M intermediate structure (A) superimposed on the ground state structure (B)
    complexed with hex, oct, ret, trd, und
  2. Domain d1cwqb_: 1cwq B: [43413]
    M intermediate structure (A) superimposed on the ground state structure (B)
    complexed with hex, oct, ret, trd, und
9. Domain for 1dze:
  - Domain d1dzea_: 1dze A: [43419]
    M intermediate trapped at 100K
    complexed with l1p, l2p, l3p, l4p, ret
10. Domain for 1e0p:
  - Domain d1e0pa_: 1e0p A: [43416]
    L intermediate
    complexed with ret
11. Domain for 1f4z:
  - Domain d1f4za_: 1f4z A: [43408]
    complexed with li1, ret, squ; mutant
12. Domain for 1f50:
  - Domain d1f50a_: 1f50 A: [43406]
    complexed with li1, ret, squ; mutant
13. Domain for 1fbb:
  - Domain d1fbba_: 1fbb A: [43425]
    complexed with ret
14. Domain for 1fbk:
  - Domain d1fbka_: 1fbk A: [43426]
    complexed with ret
15. Domain for 1iw6:
  - Domain d1iw6a_: 1iw6 A: [76865]
    ground state
    complexed with l2p, l3p, ret
16. Domain for 1iw9:
  - Domain d1iw9a_: 1iw9 A: [90711]
    complexed with l2p, l3p, ret
17. Domain for 1ixf:
  - Domain d1ixfa_: 1ixf A: [76908]
    K intermediate
    complexed with l2p, l3p, ret
18. Domain for 1jv6:
  - Domain d1jv6a_: 1jv6 A: [67346]
    complexed with li1, ret; mutant
19. Domain for 1jv7:
  - Domain d1jv7a_: 1jv7 A: [67347]
    complexed with li1, ret; mutant
20. Domain for 1kg8:
  - Domain d1kg8a_: 1kg8 A: [68579]
    an early-M intermediate
    complexed with li1, ret
21. Domain for 1kg9:
  - Domain d1kg9a_: 1kg9 A: [68580]
    a "mock-trapped" early-M intermediate
    complexed with li1, ret
22. Domain for 1kgb:
  - Domain d1kgba_: 1kgb A: [68581]
    complexed with li1, ret
23. Domains for 1kme:
  1. Domain d1kmea_: 1kme A: [68692]
    complexed with bgc, ret, squ
  2. Domain d1kmeb_: 1kme B: [68693]
    complexed with bgc, ret, squ
24. Domain for 1l0m:
  - Domain d1l0ma_: 1l0m A: [73402]
    a solution structure
25. Domain for 1m0k:
  - Domain d1m0ka_: 1m0k A: [78344]
    K intermediate
    complexed with li1, ret, squ
26. Domain for 1m0l:
  - Domain d1m0la_: 1m0l A: [78345]
    complexed with li1, ret, squ
27. Domain for 1m0m:
  - Domain d1m0ma_: 1m0m A: [78346]
    M1 intermediate
    complexed with li1, ret, squ
28. Domain for 1mgy:
  - Domain d1mgya_: 1mgy A: [84959]
    complexed with br, k, li1, ret; mutant
29. Domain for 1o0a:
  - Domain d1o0aa_: 1o0a A: [86526]
    L intermediate
    complexed with li1, ret, squ
30. Domain for 1p8h:
  - Domain d1p8ha_: 1p8h A: [87944]
    complexed with li1, ret, squ
31. Domain for 1p8i:
  - Domain d1p8ia_: 1p8i A: [87945]
    complexed with li1, ret, squ; mutant
32. Domain for 1p8u:
  - Domain d1p8ua_: 1p8u A: [87983]
    complexed with li1, ret, squ
33. Domains for 1pxr:
  1. Domain d1pxra_: 1pxr A: [95297]
    complexed with ret; mutant
  2. Domain d1pxrb_: 1pxr B: [95298]
    complexed with ret; mutant
34. Domains for 1pxs:
  1. Domain d1pxsa_: 1pxs A: [95299]
    complexed with ret; mutant
  2. Domain d1pxsb_: 1pxs B: [95300]
    complexed with ret; mutant
35. Domains for 1py6:
  1. Domain d1py6a_: 1py6 A: [95327]
    complexed with ret
  2. Domain d1py6b_: 1py6 B: [95328]
    complexed with ret
36. Domains for 1q5i:
  1. Domain d1q5ia_: 1q5i A: [95896]
    complexed with ret; mutant
  2. Domain d1q5ib_: 1q5i B: [95897]
    complexed with ret; mutant
37. Domains for 1q5j:
  1. Domain d1q5ja_: 1q5j A: [95898]
    complexed with ret; mutant
  2. Domain d1q5jb_: 1q5j B: [95899]
    complexed with ret; mutant
38. Domain for 1qhj:
  - Domain d1qhja_: 1qhj A: [43409]
    complexed with ph1, ret
39. Domain for 1qko:
  - Domain d1qkoa_: 1qko A: [43414]
    complexed with ret
40. Domain for 1qkp:
  - Domain d1qkpa_: 1qkp A: [43411]
    complexed with ret
41. Domain for 1qm8:
  - Domain d1qm8a_: 1qm8 A: [43420]
    complexed with l1p, l2p, l3p, l4p, ret
42. Domain for 1r2n:
  - Domain d1r2na_: 1r2n A: [96873]
    complexed with ret
43. Domain for 1r84:
  - Domain d1r84a_: 1r84 A: [97218]
    complexed with ret
44. Domains for 1s51:
  1. Domain d1s51a_: 1s51 A: [98517]
    complexed with ret
  2. Domain d1s51b_: 1s51 B: [98518]
    complexed with ret
45. Domains for 1s52:
  1. Domain d1s52a_: 1s52 A: [98519]
    complexed with ret
  2. Domain d1s52b_: 1s52 B: [98520]
    complexed with ret
46. Domains for 1s53:
  1. Domain d1s53a_: 1s53 A: [98521]
    complexed with ret
  2. Domain d1s53b_: 1s53 B: [98522]
    complexed with ret
47. Domains for 1s54:
  1. Domain d1s54a_: 1s54 A: [98523]
    complexed with ret
  2. Domain d1s54b_: 1s54 B: [98524]
    complexed with ret
48. Domain for 1s8j:
  - Domain d1s8ja_: 1s8j A: [105372]
    complexed with li1, no3, ret; mutant
49. Domain for 1s8l:
  - Domain d1s8la_: 1s8l A: [105373]
    complexed with li1, ret; mutant
50. Domains for 1tn0:
  1. Domain d1tn0a_: 1tn0 A: [112523]
    complexed with ret; mutant
  2. Domain d1tn0b_: 1tn0 B: [112524]
    complexed with ret; mutant
51. Domains for 1tn5:
  1. Domain d1tn5a_: 1tn5 A: [112525]
    complexed with ret; mutant
  2. Domain d1tn5b_: 1tn5 B: [112526]
    complexed with ret; mutant
52. Domain for 1ucq:
  - Domain d1ucqa_: 1ucq A: [99187]
    complexed with l2p, l3p, ret
53. Domain for 1vjm:
  - Domain d1vjma_: 1vjm A: [100824]
    complexed with ret
54. Domain for 2at9:
  - Domain d2at9a_: 2at9 A: [43427]
    complexed with 2dp, ret
55. Domain for 2ntu:
  - Domain d2ntua_: 2ntu A: [138595]
    automated match to d1cwqa_
    complexed with ret
56. Domain for 2ntw:
  - Domain d2ntwa_: 2ntw A: [138596]
    automated match to d1cwqa_
    complexed with ret
57. Domain for 2wjk:
  - Domain d2wjka_: 2wjk A: [169378]
    automated match to d1cwqa_
    complexed with li1, ret; mutant
58. Domain for 2wjl:
  - Domain d2wjla_: 2wjl A: [169379]
    automated match to d1cwqa_
    complexed with ret; mutant
59. Domains for 3coc:
  1. Domain d3coca_: 3coc A: [173370]
    automated match to d1cwqa_
    complexed with ret; mutant
  2. Domain d3cocb_: 3coc B: [173371]
    automated match to d1cwqa_
    complexed with ret; mutant
60. Domains for 3cod:
  1. Domain d3coda_: 3cod A: [173372]
    automated match to d1cwqa_
    complexed with ret; mutant
  2. Domain d3codb_: 3cod B: [173373]
    automated match to d1cwqa_
    complexed with ret; mutant
61. Domain for 3han:
  - Domain d3hana_: 3han A: [177346]
    automated match to d1cwqa_
    complexed with ret; mutant
62. Domains for 3hao:
  1. Domain d3haoa_: 3hao A: [177347]
    automated match to d1cwqa_
    complexed with ret; mutant
  2. Domain d3haob_: 3hao B: [177348]
    automated match to d1cwqa_
    complexed with ret; mutant
63. Domain for 3hap:
  - Domain d3hapa_: 3hap A: [177349]
    automated match to d1cwqa_
    complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
64. Domain for 3haq:
  - Domain d3haqa_: 3haq A: [177350]
    automated match to d1cwqa_
    complexed with cps, d10, d12, dd9, hp6, r16, ret; mutant
65. Domain for 3har:
  - Domain d3hara_: 3har A: [177351]
    automated match to d1cwqa_
    complexed with cps, ret; mutant
66. Domain for 3has:
  - Domain d3hasa_: 3has A: [177352]
    automated match to d1cwqa_
    complexed with cps, d10, d12, hp6, oct, r16, ret; mutant
67. Domain for 4md1:
  - Domain d4md1a_: 4md1 A: [260174]
    automated match to d1qhja_
    complexed with l2p, ret, sql
68. Domain for 4md2:
  - Domain d4md2a_: 4md2 A: [260173]
    automated match to d1qhja_
    complexed with l2p, ret, sql
69. Domain for 4x32:
  - Domain d4x32a_: 4x32 A: [270098]
    automated match to d1e0pa_
    complexed with li1, ret
70. Domains for 4xxj:
  1. Domain d4xxja_: 4xxj A: [274557]
    automated match to d1cwqa_
    complexed with lfa, mpg
  2. Domain d4xxjb_: 4xxj B: [274558]
    automated match to d1cwqa_
    complexed with lfa, mpg
  3. Domain d4xxjc_: 4xxj C: [274559]
    automated match to d1cwqa_
    complexed with lfa, mpg
71. Domain for 5a44:
  - Domain d5a44a_: 5a44 A: [279104]
    automated match to d1qhja_
    complexed with hp6, li1, ret
72. Domain for 5a45:
  - Domain d5a45a_: 5a45 A: [279105]
    automated match to d1qhja_
    complexed with ret
73. Domain for 5b34:
  - Domain d5b34a_: 5b34 A: [324854]
    automated match to d1p8ha_
    complexed with 4ql, d10, d12, dd9, hp6, oct, r16, ret
74. Domain for 5b35:
  - Domain d5b35a_: 5b35 A: [324861]
    automated match to d1p8ha_
    complexed with 4qm, d10, d12, dd9, hp6, oct, r16, ret
75. Domain for 5b6v:
  - Domain d5b6va_: 5b6v A: [327348]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
76. Domain for 5b6w:
  - Domain d5b6wa_: 5b6w A: [327306]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
77. Domain for 5b6x:
  - Domain d5b6xa_: 5b6x A: [327300]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
78. Domain for 5b6y:
  - Domain d5b6ya_: 5b6y A: [327383]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
79. Domain for 5b6z:
  - Domain d5b6za_: 5b6z A: [327305]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
80. Domain for 5br2:
  - Domain d5br2a_: 5br2 A: [322455]
    automated match to d1p8ha_
    complexed with ret
81. Domain for 5br5:
  - Domain d5br5a_: 5br5 A: [322537]
    automated match to d1cwqa_
    complexed with ret
82. Domain for 5h2h:
  - Domain d5h2ha_: 5h2h A: [327394]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
83. Domain for 5h2i:
  - Domain d5h2ia_: 5h2i A: [327351]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
84. Domain for 5h2j:
  - Domain d5h2ja_: 5h2j A: [327341]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
85. Domain for 5h2k:
  - Domain d5h2ka_: 5h2k A: [327340]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
86. Domain for 5h2l:
  - Domain d5h2la_: 5h2l A: [327330]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
87. Domain for 5h2m:
  - Domain d5h2ma_: 5h2m A: [327333]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
88. Domain for 5h2n:
  - Domain d5h2na_: 5h2n A: [327362]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
89. Domain for 5h2o:
  - Domain d5h2oa_: 5h2o A: [327339]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
90. Domain for 5h2p:
  - Domain d5h2pa_: 5h2p A: [327356]
    automated match to d1qhja_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
91. Domain for 5j7a:
  - Domain d5j7aa_: 5j7a A: [321912]
    automated match to d1r84a_
    complexed with li1, ret
92. Domains for 5vn7:
  1. Domain d5vn7a_: 5vn7 A: [336675]
    automated match to d1m0ma_
  2. Domain d5vn7b_: 5vn7 B: [336678]
    automated match to d1m0ma_
93. Domains for 5vn9:
  1. Domain d5vn9a_: 5vn9 A: [336700]
    automated match to d1m0ma_
  2. Domain d5vn9b_: 5vn9 B: [336751]
    automated match to d1m0ma_
94. Domain for 5zim:
  - Domain d5zima_: 5zim A: [358720]
    automated match to d1e0pa_
    complexed with l2p, ret
95. Domain for 5zin:
  - Domain d5zina_: 5zin A: [358714]
    automated match to d1e0pa_
    complexed with l2p, ret
96. Domain for 6g7h:
  - Domain d6g7ha_: 6g7h A: [353942]
    automated match to d1qhja_
    complexed with li1, olc, ret
97. Domain for 6g7i:
  - Domain d6g7ia_: 6g7i A: [353939]
    automated match to d1m0ma_
    complexed with li1, olc, ret
98. Domain for 6g7j:
  - Domain d6g7ja_: 6g7j A: [354037]
    automated match to d1m0ma_
    complexed with li1, olc, ret
99. Domain for 6g7k:
  - Domain d6g7ka_: 6g7k A: [353947]
    automated match to d1m0ma_
    complexed with li1, olc, ret
100. Domain for 6g7l:
  - Domain d6g7la_: 6g7l A: [353973]
    automated match to d1m0ma_
    complexed with li1, olc, ret
101. Domain for 6ga1:
  - Domain d6ga1a_: 6ga1 A: [368097]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
102. Domain for 6ga2:
  - Domain d6ga2a_: 6ga2 A: [368081]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
103. Domain for 6ga3:
  - Domain d6ga3a_: 6ga3 A: [368086]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
104. Domain for 6ga4:
  - Domain d6ga4a_: 6ga4 A: [368088]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
105. Domain for 6ga5:
  - Domain d6ga5a_: 6ga5 A: [368072]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
106. Domain for 6ga6:
  - Domain d6ga6a_: 6ga6 A: [368064]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
107. Domain for 6ga7:
  - Domain d6ga7a_: 6ga7 A: [368090]
    automated match to d1cwqa_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
108. Domain for 6ga8:
  - Domain d6ga8a_: 6ga8 A: [368089]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
109. Domain for 6ga9:
  - Domain d6ga9a_: 6ga9 A: [368095]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
110. Domain for 6gaa:
  - Domain d6gaaa_: 6gaa A: [368076]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
111. Domain for 6gab:
  - Domain d6gaba_: 6gab A: [368079]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
112. Domain for 6gac:
  - Domain d6gaca_: 6gac A: [368061]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
113. Domain for 6gad:
  - Domain d6gada_: 6gad A: [368063]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
114. Domain for 6gae:
  - Domain d6gaea_: 6gae A: [368101]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
115. Domain for 6gaf:
  - Domain d6gafa_: 6gaf A: [368087]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
116. Domain for 6gag:
  - Domain d6gaga_: 6gag A: [368100]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
117. Domain for 6gah:
  - Domain d6gaha_: 6gah A: [368069]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
118. Domain for 6gai:
  - Domain d6gaia_: 6gai A: [368096]
    automated match to d1r2na_
    complexed with c14, d10, dd9, hp6, l2p, mys, oct, ret, trd, und
Halobacterium sp. [TaxId:64091] [346420] (7 PDB entries)
1. Domain for 1r3p:
  - Domain d1r3pa_: 1r3p A: [302968]
    automated match to d1vjma_
    complexed with ret
2. Domains for 3t45:
  1. Domain d3t45a_: 3t45 A: [249774]
    automated match to d1r84a_
    complexed with li1, ret; mutant
  2. Domain d3t45b_: 3t45 B: [249775]
    automated match to d1r84a_
    complexed with li1, ret; mutant
  3. Domain d3t45c_: 3t45 C: [249776]
    automated match to d1r84a_
    complexed with li1, ret; mutant
3. Domain for 3utv:
  - Domain d3utva_: 3utv A: [195403]
    automated match to d1cwqa_
    complexed with mc3, ret; mutant
4. Domain for 3utw:
  - Domain d3utwa_: 3utw A: [195405]
    automated match to d1cwqa_
    complexed with bog, mc3, ret; mutant
5. Domains for 3utx:
  1. Domain d3utxa_: 3utx A: [195407]
    automated match to d1cwqa_
    complexed with d12, ret; mutant
  2. Domain d3utxb_: 3utx B: [195406]
    automated match to d1cwqa_
    complexed with d12, ret; mutant
6. Domains for 3uty:
  1. Domain d3utya_: 3uty A: [195404]
    automated match to d1cwqa_
    complexed with d12, ret; mutant
  2. Domain d3utyb_: 3uty B: [195402]
    automated match to d1cwqa_
    complexed with d12, ret; mutant
7. Domain for 4ov0:
  - Domain d4ov0a_: 4ov0 A: [259881]
    automated match to d1p8ha_
    complexed with ret

More info for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like:

Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like first appeared (with stable ids) in SCOP 1.55, called Protein Bacteriorhodopsin from f.2.1.1: Seven-helix membrane receptors
Protein Bacteriorhodopsin from f.13.1.1: Bacteriorhodopsin-like appears in SCOPe 2.07