SCOPe 2.08: Family f.13.1.1: Bacteriorhodopsin-like

Lineage for Family f.13.1.1: Bacteriorhodopsin-like

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)

Proteins:

1. Archaerhodopsin-1 [90105] (1 species)

   • Species Halobacterium sp. [TaxId:2243] [90106] (1 PDB entry)

2. Bacteriorhodopsin [56871] (3 species)
   a light-driven proton pump

   1. Species Halobacterium halobium [TaxId:2242] [56872] (3 PDB entries)

   2. Species Halobacterium salinarum [TaxId:2242] [56873] (118 PDB entries)
      Uniprot P02945 17-245

   3. Species Halobacterium sp. [TaxId:64091] [346420] (7 PDB entries)

3. Halorhodopsin [56874] (1 species)
   a light-driven chloride pump

   • Species Halobacterium salinarum [TaxId:2242] [56875] (1 PDB entry)

4. Sensory rhodopsin [118224] (1 species)

   • Species Nostoc sp. PCC 7120 [TaxId:103690] [118225] (1 PDB entry)
     Uniprot Q8YSC4 # alr3165

5. Sensory rhodopsin II [64526] (1 species)

   • Species Natronobacterium pharaonis [TaxId:2257] [64527] (14 PDB entries)

6. automated matches [190122] (8 species)
   not a true protein

   1. Species Halobacterium salinarium [TaxId:2242] [188662] (3 PDB entries)

   2. Species Halobacterium salinarum [TaxId:2242] [186845] (18 PDB entries)

   3. Species Halobacterium salinarum [TaxId:478009] [311987] (1 PDB entry)

   4. Species Halobacterium salinarum [TaxId:64091] [270103] (7 PDB entries)

   5. Species Halobacterium sp. [TaxId:29285] [188058] (3 PDB entries)

   6. Species Halobacterium sp. [TaxId:64091] [193950] (1 PDB entry)

   7. Species Halorubrum sodomense [TaxId:35743] [375306] (5 PDB entries)

   8. Species Nostoc sp. [TaxId:103690] [258526] (1 PDB entry)

More info for Family f.13.1.1: Bacteriorhodopsin-like

Timeline for Family f.13.1.1: Bacteriorhodopsin-like:

• Family f.13.1.1: Bacteriorhodopsin-like first appeared in SCOP 1.63
  
• Family f.13.1.1: Bacteriorhodopsin-like appears in SCOPe 2.07