Lineage for d1c6va_ (1c6v A:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2883383Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2885833Superfamily c.55.3: Ribonuclease H-like [53098] (18 families) (S)
    consists of one domain of this fold
  5. 2886113Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
    Pfam PF00665
  6. 2886114Protein Retroviral integrase, catalytic domain [53108] (5 species)
  7. 2886274Species Simian immunodeficiency virus [TaxId:11723] [53111] (3 PDB entries)
  8. 2886279Domain d1c6va_: 1c6v A: [33672]
    Other proteins in same PDB: d1c6vx_
    mutant

Details for d1c6va_

PDB Entry: 1c6v (more details), 3 Å

PDB Description: siv integrase (catalytic domain + dna biding domain comprising residues 50-293) mutant with phe 185 replaced by his (f185h)
PDB Compounds: (A:) protein (siv integrase)

SCOPe Domain Sequences for d1c6va_:

Sequence, based on SEQRES records: (download)

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
nsdlgtwqmdcthlegkivivavhvasgfieaevipqetgrqtalfllklagrwpithlh
tdnganfasqevkmvawwagiehtfgvpynpqsqgvveamnhhlknqidrireqansvet
ivlmavhcmnhkrrggigdmtpaerlinmitteqeiqfq

Sequence, based on observed residues (ATOM records): (download)

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
nsdlgtwqmdcthlegkivivavhvasgfieaevipqetgrqtalfllklagrwpithlh
tdnganfasqevkmvawwagiehtfgeamnhhlknqidrireqansvetivlmavhcmnh
krrggigdmtpaerlinmitteqeiqfq

SCOPe Domain Coordinates for d1c6va_:

Click to download the PDB-style file with coordinates for d1c6va_.
(The format of our PDB-style files is described here.)

Timeline for d1c6va_: