SCOPe 2.08: Domain d1gyqd1: 1gyq D:1-165,D:335-358

Lineage for d1gyqd1 (1gyq D:1-165,D:335-358)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800] (22 proteins)
   family members also share a common alpha+beta fold in C-terminal domain

6. Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [51801] (21 species)

7. Species Trypanosome (Leishmania mexicana) [TaxId:5665] [51809] (5 PDB entries)

8. Domain d1gyqd1: 1gyq D:1-165,D:335-358 [30015]
   Other proteins in same PDB: d1gyqa2, d1gyqb2, d1gyqc2, d1gyqd2
   complexed with nbd

Details for d1gyqd1

PDB Entry: 1gyq, 3.4 Å

PDB Description: crystal structure of glycosomal glyceraldehyde from leishmania mexicana in complex with n6-benzyl-nad

PDB Compounds: (D:) protein (glyceraldehyde-3-phosphate dehydrogenase)

SCOPe Domain Sequences for d1gyqd1:

Sequence; same for both SEQRES and ATOM records:

>d1gyqd1 c.2.1.3 (D:1-165,D:335-358) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
apikvgingfgrigrmvfqaicdqgligteidvvavvdmstnaeyfayqmkhdtvhgrpk
ytveavksspsvetadvlvvnghrikcvkaqrnpadlpwgklgvdyviestglftdklka
eghikggakkvvisapasggaktivmgvnqheyspashhvvsnasXnewayshrvvdlvr
ymaakdaass

Timeline for d1gyqd1:

• d1gyqd1 first appeared (with stable ids) in SCOP 1.55
  
• d1gyqd1 appears in SCOPe 2.07