SCOPe 2.06: Domain d5c9aa_: 5c9a A:

Lineage for d5c9aa_ (5c9a A:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (13 species)
   not a true protein

7. Species Coxsackievirus a16 [TaxId:31704] [276271] (3 PDB entries)

8. Domain d5c9aa_: 5c9a A: [276276]
   Other proteins in same PDB: d5c9ac_
   automated match to d4ceya_
   complexed with cl, k, sph

Details for d5c9aa_

PDB Entry: 5c9a, 2.7 Å

PDB Description: crystal structure of empty coxsackievirus a16 particle

PDB Compounds: (A:) vp1

SCOPe Domain Sequences for d5c9aa_:

Sequence, based on SEQRES records:

>d5c9aa_ b.121.4.0 (A:) automated matches {Coxsackievirus a16 [TaxId: 31704]}
dpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasdk
nlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlrr
kcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvfv
kmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgie
ksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

Sequence, based on observed residues (ATOM records):

>d5c9aa_ b.121.4.0 (A:) automated matches {Coxsackievirus a16 [TaxId: 31704]}
dpiadmisltalqvlptaanteasshrvvpalqaaetgassnasdknlietrcvlnhhst
qetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlrrkcelftymrfdaef
tfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfm
spasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgieksphsitlrvymri
khvrawiprplrnqpylfktnpnykgndikctstsrdkittl

Timeline for d5c9aa_:

• d5c9aa_ first appeared in SCOPe 2.05
  
• d5c9aa_ appears in SCOPe 2.07
  
• d5c9aa_ appears in the current release, SCOPe 2.08