SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)
Family b.121.4.0: automated matches [191569] (1 protein)
not a true family
Protein automated matches [190988] (13 species)
not a true protein

Species:

Aichivirus a [TaxId:72149] [312940] (1 PDB entry)
- Domain for 5aoo:
  - Domain d5aooc_: 5aoo C: [312941]
    automated match to d1ncqc_
Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry)
- Domain for 5c8c:
  - Domain d5c8ca_: 5c8c A: [277503]
    Other proteins in same PDB: d5c8cc_
    automated match to d4ceya_
    complexed with cl, k, ste
Coxsackievirus a16 [TaxId:31704] [276271] (3 PDB entries)
1. Domains for 5abj:
  1. Domain d5abja_: 5abj A: [276643]
    Other proteins in same PDB: d5abjc_
    automated match to d4ceya_
    complexed with cl, na, ym2
  2. Domain d5abjb_: 5abj B: [276642]
    Other proteins in same PDB: d5abjc_
    automated match to d4jgyb_
    complexed with cl, na, ym2
2. Domains for 5c4w:
  1. Domain d5c4wa_: 5c4w A: [276273]
    Other proteins in same PDB: d5c4wc_
    automated match to d4ceya_
    complexed with cl, k, na, sph
  2. Domain d5c4wb_: 5c4w B: [276272]
    Other proteins in same PDB: d5c4wc_
    automated match to d4jgyb_
    complexed with cl, k, na, sph
3. Domain for 5c9a:
  - Domain d5c9aa_: 5c9a A: [276276]
    Other proteins in same PDB: d5c9ac_
    automated match to d4ceya_
    complexed with cl, k, sph
Coxsackievirus a6 [TaxId:86107] [339715] (1 PDB entry)
- Domains for 5xs4:
  1. Domain d5xs4a1: 5xs4 A:71-290 [339741]
    Other proteins in same PDB: d5xs4c_
    automated match to d5abja_
  2. Domain d5xs4b_: 5xs4 B: [339716]
    Other proteins in same PDB: d5xs4c_
    automated match to d4jgyb_
Enterovirus a71 [TaxId:39054] [261947] (8 PDB entries)
1. Domain for 3vbo:
  - Domain d3vbob_: 3vbo B: [262351]
    automated match to d4rqpc_
    complexed with na
2. Domain for 4cdq:
  - Domain d4cdqb_: 4cdq B: [262566]
    Other proteins in same PDB: d4cdqc_
    automated match to d4rqpc_
    complexed with 7vr, na
3. Domain for 4cdu:
  - Domain d4cdub_: 4cdu B: [262567]
    Other proteins in same PDB: d4cduc_
    automated match to d4rqpc_
    complexed with cl, na, ym2
4. Domain for 4cdw:
  - Domain d4cdwb_: 4cdw B: [262568]
    Other proteins in same PDB: d4cdwc_
    automated match to d4rqpc_
    complexed with na, vr2
5. Domain for 4cdx:
  - Domain d4cdxb_: 4cdx B: [262569]
    Other proteins in same PDB: d4cdxc_
    automated match to d4rqpc_
    complexed with jf0, na
6. Domain for 4cew:
  - Domain d4cewb_: 4cew B: [262570]
    Other proteins in same PDB: d4cewc_
    automated match to d4rqpc_
    complexed with 7j5
7. Domain for 4cey:
  - Domain d4ceyb_: 4cey B: [262571]
    Other proteins in same PDB: d4ceyc_
    automated match to d4rqpc_
    complexed with 906, na
8. Domains for 4rqp:
  1. Domain d4rqpc_: 4rqp C: [261948]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  2. Domain d4rqpg_: 4rqp G: [261951]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  3. Domain d4rqpk_: 4rqp K: [261956]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
  4. Domain d4rqpo_: 4rqp O: [261967]
    Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
    automated match to d1pov0_
Enterovirus d68 [TaxId:42789] [269068] (5 PDB entries)
1. Domains for 4wm7:
  1. Domain d4wm7a_: 4wm7 A: [269069]
    automated match to d1h8ta_
    complexed with w11
  2. Domain d4wm7c_: 4wm7 C: [269070]
    automated match to d3vbhc_
    complexed with w11
2. Domains for 4wm8:
  1. Domain d4wm8a_: 4wm8 A: [269072]
    automated match to d1h8ta_
    complexed with dka
  2. Domain d4wm8c_: 4wm8 C: [269073]
    automated match to d3vbhc_
    complexed with dka
3. Domains for 5bnn:
  1. Domain d5bnna_: 5bnn A: [279415]
    automated match to d1h8ta_
    complexed with 4u0
  2. Domain d5bnnc_: 5bnn C: [279414]
    automated match to d3vbhc_
    complexed with 4u0
4. Domains for 5bno:
  1. Domain d5bnoa_: 5bno A: [279409]
    automated match to d1h8ta_
    complexed with 4u1
  2. Domain d5bnoc_: 5bno C: [279413]
    automated match to d3vbhc_
    complexed with 4u1
5. Domains for 5bnp:
  1. Domain d5bnpa_: 5bnp A: [279411]
    automated match to d1h8ta_
    complexed with 4u2
  2. Domain d5bnpc_: 5bnp C: [279412]
    automated match to d3vbhc_
    complexed with 4u2
Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry)
- Domain for 2ws9:
  - Domain d2ws93_: 2ws9 3: [244274]
    automated match to d1cov3_
Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry)
- Domain for 2wzr:
  - Domain d2wzr1_: 2wzr 1: [244362]
    Other proteins in same PDB: d2wzr3_
    automated match to d1fmd1_
Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries)
1. Domains for 4jgy:
  1. Domain d4jgya_: 4jgy A: [252939]
    automated match to d1cov1_
  2. Domain d4jgyb_: 4jgy B: [262755]
    automated match to d4rqpc_
  3. Domain d4jgyc_: 4jgy C: [252940]
    automated match to d1cov3_
2. Domains for 4jgz:
  1. Domain d4jgza_: 4jgz A: [252941]
    automated match to d1cov1_
  2. Domain d4jgzb_: 4jgz B: [262756]
    automated match to d4rqpc_
  3. Domain d4jgzc_: 4jgz C: [252942]
    automated match to d1cov3_
Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries)
1. Domains for 3vbf:
  1. Domain d3vbfa_: 3vbf A: [201218]
    Other proteins in same PDB: d3vbfc_
    automated match to d1d4m1_
    complexed with amp, cl, k, na, sph
  2. Domain d3vbfb_: 3vbf B: [262349]
    Other proteins in same PDB: d3vbfc_
    automated match to d4rqpc_
    complexed with amp, cl, k, na, sph
2. Domains for 3vbh:
  1. Domain d3vbha_: 3vbh A: [217747]
    Other proteins in same PDB: d3vbhc_
    automated match to d1d4m1_
    complexed with cl, k, na, sph
  2. Domain d3vbhb_: 3vbh B: [262350]
    Other proteins in same PDB: d3vbhc_
    automated match to d4rqpc_
    complexed with cl, k, na, sph
3. Domain for 3vbo:
  - Domain d3vboc_: 3vbo C: [217749]
    automated match to d3cjib_
    complexed with na
4. Domains for 3vbs:
  1. Domain d3vbsa_: 3vbs A: [250356]
    automated match to d3vbha_
    complexed with sph
  2. Domain d3vbsb_: 3vbs B: [262352]
    automated match to d4rqpc_
    complexed with sph
  3. Domain d3vbsc_: 3vbs C: [250357]
    automated match to d1cov3_
    complexed with sph
5. Domains for 3zfe:
  1. Domain d3zfea_: 3zfe A: [201312]
    Other proteins in same PDB: d3zfec_
    automated match to d2plv1_
    complexed with cl, na, sph
  2. Domain d3zfeb_: 3zfe B: [262506]
    Other proteins in same PDB: d3zfec_
    automated match to d4rqpc_
    complexed with cl, na, sph
6. Domain for 4cdq:
  - Domain d4cdqa_: 4cdq A: [236691]
    Other proteins in same PDB: d4cdqc_
    automated match to d3vbfa_
    complexed with 7vr, na
7. Domain for 4cdu:
  - Domain d4cdua_: 4cdu A: [236978]
    Other proteins in same PDB: d4cduc_
    automated match to d4cdwa_
    complexed with cl, na, ym2
8. Domain for 4cdw:
  - Domain d4cdwa_: 4cdw A: [236690]
    Other proteins in same PDB: d4cdwc_
    automated match to d3vbfa_
    complexed with na, vr2
9. Domain for 4cdx:
  - Domain d4cdxa_: 4cdx A: [236976]
    Other proteins in same PDB: d4cdxc_
    automated match to d4cdwa_
    complexed with jf0, na
10. Domain for 4cew:
  - Domain d4cewa_: 4cew A: [236695]
    Other proteins in same PDB: d4cewc_
    automated match to d3vbfa_
    complexed with 7j5
11. Domain for 4cey:
  - Domain d4ceya_: 4cey A: [236694]
    Other proteins in same PDB: d4ceyc_
    automated match to d3vbfa_
    complexed with 906, na
Rhinovirus c [TaxId:463676] [319565] (2 PDB entries)
1. Domains for 5jzg:
  1. Domain d5jzgb_: 5jzg B: [319583]
    automated match to d1d4m3_
  2. Domain d5jzgc_: 5jzg C: [319566]
    automated match to d1pov0_
2. Domains for 5k0u:
  1. Domain d5k0ua_: 5k0u A: [319582]
    automated match to d1k5ma_
  2. Domain d5k0ub_: 5k0u B: [319608]
    automated match to d1d4m3_
Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry)
- Domains for 2izw:
  1. Domain d2izwa_: 2izw A: [230869]
    automated match to d2izwc_
  2. Domain d2izwb_: 2izw B: [230870]
    automated match to d2izwc_
  3. Domain d2izwc_: 2izw C: [204914]
    automated match to d1smvc_
Seneca valley virus [TaxId:390157] [188689] (1 PDB entry)
- Domains for 3cji:
  1. Domain d3cjia_: 3cji A: [199192]
    automated match to d1tme1_
    complexed with ca
  2. Domain d3cjib_: 3cji B: [173278]
    automated match to d2mev3_
    complexed with ca

More info for Protein automated matches from b.121.4.0: automated matches

Timeline for Protein automated matches from b.121.4.0: automated matches:

Protein automated matches from b.121.4.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from b.121.4.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.121.4.0: automated matches appears in SCOPe 2.07
Protein automated matches from b.121.4.0: automated matches appears in the current release, SCOPe 2.08