SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.108: HAD-like [56783] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
Superfamily c.108.1: HAD-like [56784] (26 families)
usually contains an insertion (sub)domain after strand 1
Family c.108.1.2: YihX-like [56789] (3 proteins)
the insertion subdomain is a 4-helical bundle
automatically mapped to Pfam PF13419
Protein automated matches [272539] (1 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [272542] (54 PDB entries)
1. Domain for 5ahx:
  - Domain d5ahxa1: 5ahx A:2-227 [272546]
    Other proteins in same PDB: d5ahxa2
    automated match to d1zd3a1
    complexed with gol, so4
2. Domain for 5ai0:
  - Domain d5ai0a1: 5ai0 A:2-227 [272549]
    Other proteins in same PDB: d5ai0a2
    automated match to d1zd3a1
    complexed with dms, jf6, peg, so4
3. Domain for 5ai4:
  - Domain d5ai4a1: 5ai4 A:2-227 [272564]
    Other proteins in same PDB: d5ai4a2
    automated match to d1zd3a1
    complexed with 4vy, dms, gol
4. Domain for 5ai5:
  - Domain d5ai5a1: 5ai5 A:2-227 [272556]
    Other proteins in same PDB: d5ai5a2
    automated match to d1zd3a1
    complexed with bsu, dms
5. Domain for 5ai6:
  - Domain d5ai6a1: 5ai6 A:2-227 [272557]
    Other proteins in same PDB: d5ai6a2
    automated match to d1zd3a1
    complexed with 4xh, dms, gol, so4
6. Domain for 5ai8:
  - Domain d5ai8a1: 5ai8 A:2-227 [272561]
    Other proteins in same PDB: d5ai8a2
    automated match to d1zd3a1
    complexed with gol, k2t, so4
7. Domain for 5ai9:
  - Domain d5ai9a1: 5ai9 A:2-227 [272548]
    Other proteins in same PDB: d5ai9a2
    automated match to d1zd3a1
    complexed with gol, k78, so4
8. Domain for 5aia:
  - Domain d5aiaa1: 5aia A:2-227 [272554]
    Other proteins in same PDB: d5aiaa2
    automated match to d1zd3a1
    complexed with dms, kwb, so4
9. Domain for 5aib:
  - Domain d5aiba1: 5aib A:2-227 [272560]
    Other proteins in same PDB: d5aiba2
    automated match to d1zd3a1
    complexed with kju, so4
10. Domain for 5aic:
  - Domain d5aica1: 5aic A:2-227 [272547]
    Other proteins in same PDB: d5aica2
    automated match to d1zd3a1
    complexed with peg, so4, tgx
11. Domain for 5ak3:
  - Domain d5ak3a1: 5ak3 A:2-227 [272574]
    Other proteins in same PDB: d5ak3a2
    automated match to d1zd3a1
    complexed with dms, so4, xm0
12. Domain for 5ak4:
  - Domain d5ak4a1: 5ak4 A:2-227 [272576]
    Other proteins in same PDB: d5ak4a2
    automated match to d1zd3a1
    complexed with dms, gvg
13. Domain for 5ak5:
  - Domain d5ak5a1: 5ak5 A:2-227 [272583]
    Other proteins in same PDB: d5ak5a2
    automated match to d1zd3a1
    complexed with dms, v2z
14. Domain for 5ak6:
  - Domain d5ak6a1: 5ak6 A:2-227 [272568]
    Other proteins in same PDB: d5ak6a2
    automated match to d1zd3a1
    complexed with gol, peg, so4, ypn
15. Domain for 5ake:
  - Domain d5akea1: 5ake A:2-227 [272575]
    Other proteins in same PDB: d5akea2
    automated match to d1zd3a1
    complexed with 6n0, dms, gol, so4
16. Domain for 5akg:
  - Domain d5akga1: 5akg A:2-227 [272566]
    Other proteins in same PDB: d5akga2
    automated match to d1zd3a1
    complexed with 6n6, dms, so4
17. Domain for 5akh:
  - Domain d5akha1: 5akh A:2-227 [272585]
    Other proteins in same PDB: d5akha2
    automated match to d1zd3a1
    complexed with 6nm, dms, so4
18. Domain for 5aki:
  - Domain d5akia1: 5aki A:2-227 [272590]
    Other proteins in same PDB: d5akia2
    automated match to d1zd3a1
    complexed with 6nf, dms, gol, peg, so4
19. Domain for 5akj:
  - Domain d5akja1: 5akj A:2-227 [272570]
    Other proteins in same PDB: d5akja2
    automated match to d1zd3a1
    complexed with 6n4, dms, so4
20. Domain for 5akk:
  - Domain d5akka1: 5akk A:2-227 [272582]
    Other proteins in same PDB: d5akka2
    automated match to d1zd3a1
    complexed with 1p8, so4
21. Domain for 5akl:
  - Domain d5akla1: 5akl A:2-227 [272592]
    Other proteins in same PDB: d5akla2
    automated match to d1zd3a1
    complexed with 6n8, so4
22. Domain for 5akx:
  - Domain d5akxa1: 5akx A:2-227 [272580]
    Other proteins in same PDB: d5akxa2
    automated match to d1zd3a1
    complexed with 8ny, dms, so4
23. Domain for 5aky:
  - Domain d5akya1: 5aky A:2-227 [272584]
    Other proteins in same PDB: d5akya2
    automated match to d1zd3a1
    complexed with 6nj, dms, so4
24. Domain for 5akz:
  - Domain d5akza1: 5akz A:2-227 [272571]
    Other proteins in same PDB: d5akza2
    automated match to d1zd3a1
    complexed with 6nx, gol, so4
25. Domain for 5ald:
  - Domain d5alda1: 5ald A:2-227 [272604]
    Other proteins in same PDB: d5alda2
    automated match to d1zd3a1
    complexed with dms, fcw, so4
26. Domain for 5ale:
  - Domain d5alea1: 5ale A:2-227 [272636]
    Other proteins in same PDB: d5alea2
    automated match to d1zd3a1
    complexed with gol, onr, so4
27. Domain for 5alf:
  - Domain d5alfa1: 5alf A:2-227 [272634]
    Other proteins in same PDB: d5alfa2
    automated match to d1zd3a1
    complexed with oe1
28. Domain for 5alg:
  - Domain d5alga1: 5alg A:2-227 [272624]
    Other proteins in same PDB: d5alga2
    automated match to d1zd3a1
    complexed with dms, r4n, so4
29. Domain for 5alh:
  - Domain d5alha1: 5alh A:2-227 [272594]
    Other proteins in same PDB: d5alha2
    automated match to d1zd3a1
    complexed with 4ua, dms, so4
30. Domain for 5ali:
  - Domain d5alia1: 5ali A:2-227 [272616]
    Other proteins in same PDB: d5alia2
    automated match to d1zd3a1
    complexed with peg, q3b, so4
31. Domain for 5alj:
  - Domain d5alja1: 5alj A:2-227 [272618]
    Other proteins in same PDB: d5alja2
    automated match to d1zd3a1
    complexed with gol, so4, t5j
32. Domain for 5alk:
  - Domain d5alka1: 5alk A:2-227 [272632]
    Other proteins in same PDB: d5alka2
    automated match to d1zd3a1
    complexed with dms, so4, wmr
33. Domain for 5all:
  - Domain d5alla1: 5all A:2-227 [272610]
    Other proteins in same PDB: d5alla2
    automated match to d1zd3a1
    complexed with dms, ii6, so4
34. Domain for 5alm:
  - Domain d5alma1: 5alm A:2-227 [272646]
    Other proteins in same PDB: d5alma2
    automated match to d1zd3a1
    complexed with 7gm, dms
35. Domain for 5aln:
  - Domain d5alna1: 5aln A:2-227 [272630]
    Other proteins in same PDB: d5alna2
    automated match to d1zd3a1
    complexed with 5zm, dms, so4
36. Domain for 5alo:
  - Domain d5aloa1: 5alo A:2-227 [272600]
    Other proteins in same PDB: d5aloa2
    automated match to d1zd3a1
    complexed with a0j, dms
37. Domain for 5alp:
  - Domain d5alpa1: 5alp A:2-227 [272614]
    Other proteins in same PDB: d5alpa2
    automated match to d1zd3a1
    complexed with gol, peg, qyd, so4
38. Domain for 5alq:
  - Domain d5alqa1: 5alq A:2-227 [272597]
    Other proteins in same PDB: d5alqa2
    automated match to d1zd3a1
    complexed with gzp, so4
39. Domain for 5alr:
  - Domain d5alra1: 5alr A:2-227 [272596]
    Other proteins in same PDB: d5alra2
    automated match to d1zd3a1
    complexed with 8tm, so4
40. Domain for 5als:
  - Domain d5alsa1: 5als A:2-227 [272606]
    Other proteins in same PDB: d5alsa2
    automated match to d1zd3a1
    complexed with 5dq, so4
41. Domain for 5alt:
  - Domain d5alta1: 5alt A:2-227 [272612]
    Other proteins in same PDB: d5alta2
    automated match to d1zd3a1
    complexed with 9xz, dms, peg, so4
42. Domain for 5alu:
  - Domain d5alua1: 5alu A:2-227 [272602]
    Other proteins in same PDB: d5alua2
    automated match to d1zd3a1
    complexed with dms, hd2
43. Domain for 5alv:
  - Domain d5alva1: 5alv A:2-227 [272620]
    Other proteins in same PDB: d5alva2
    automated match to d1zd3a1
    complexed with 6tz, so4
44. Domain for 5alw:
  - Domain d5alwa1: 5alw A:2-227 [272608]
    Other proteins in same PDB: d5alwa2
    automated match to d1zd3a1
    complexed with dms, jqn, so4
45. Domain for 5alx:
  - Domain d5alxa1: 5alx A:2-227 [272628]
    Other proteins in same PDB: d5alxa2
    automated match to d1zd3a1
    complexed with dms, dul, so4
46. Domain for 5aly:
  - Domain d5alya1: 5aly A:2-227 [272626]
    Other proteins in same PDB: d5alya2
    automated match to d1zd3a1
    complexed with b7h, dms, so4
47. Domain for 5alz:
  - Domain d5alza1: 5alz A:2-227 [272622]
    Other proteins in same PDB: d5alza2
    automated match to d1zd3a1
    complexed with so4, xq9
48. Domain for 5am0:
  - Domain d5am0a1: 5am0 A:2-227 [272644]
    Other proteins in same PDB: d5am0a2
    automated match to d1zd3a1
    complexed with dms, lws, so4
49. Domain for 5am1:
  - Domain d5am1a1: 5am1 A:2-227 [272648]
    Other proteins in same PDB: d5am1a2
    automated match to d1zd3a1
    complexed with dms, i5t, so4
50. Domain for 5am2:
  - Domain d5am2a1: 5am2 A:2-227 [272638]
    Other proteins in same PDB: d5am2a2
    automated match to d1zd3a1
    complexed with dms, kuf, peg, so4
51. Domain for 5am3:
  - Domain d5am3a1: 5am3 A:2-227 [272642]
    Other proteins in same PDB: d5am3a2
    automated match to d1zd3a1
    complexed with aub, gol, peg, so4
52. Domain for 5am4:
  - Domain d5am4a1: 5am4 A:2-227 [272650]
    Other proteins in same PDB: d5am4a2
    automated match to d1zd3a1
    complexed with dms, mvj, so4
53. Domain for 5am5:
  - Domain d5am5a1: 5am5 A:2-227 [272640]
    Other proteins in same PDB: d5am5a2
    automated match to d1zd3a1
    complexed with 6nz, dms
54. Domain for 5fp0:
  - Domain d5fp0a1: 5fp0 A:2-227 [314456]
    Other proteins in same PDB: d5fp0a2
    automated match to d1zd3a1
    complexed with dms, szc

More info for Protein automated matches from c.108.1.2: YihX-like

Timeline for Protein automated matches from c.108.1.2: YihX-like:

Protein automated matches from c.108.1.2: YihX-like first appeared in SCOPe 2.05
Protein automated matches from c.108.1.2: YihX-like appears in SCOPe 2.06
Protein automated matches from c.108.1.2: YihX-like appears in the current release, SCOPe 2.08