SCOPe 2.05: Domain d4q5sd_: 4q5s D:

Lineage for d4q5sd_ (4q5s D:)

1. Root: SCOPe 2.05

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.2: RNA-polymerase beta-prime [64490] (3 proteins)

6. Protein automated matches [254473] (5 species)
   not a true protein

7. Species Thermus thermophilus [TaxId:300852] [257261] (2 PDB entries)

8. Domain d4q5sd_: 4q5s D: [259965]
   Other proteins in same PDB: d4q5sc_, d4q5se_, d4q5sf1, d4q5sf2, d4q5sf3
   automated match to d4g7od_
   protein/DNA complex; protein/RNA complex; complexed with atp, mg, zn

Details for d4q5sd_

PDB Entry: 4q5s, 3 Å

PDB Description: Thermus thermophilus RNA polymerase initially transcribing complex containing 6-mer RNA

PDB Compounds: (D:) DNA-directed RNA polymerase subunit beta'

SCOPe Domain Sequences for d4q5sd_:

Sequence, based on SEQRES records:

>d4q5sd_ e.29.1.2 (D:) automated matches {Thermus thermophilus [TaxId: 300852]}
evrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgky
krqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsatel
eqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkdge
evvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgeila
elpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekgqp
laeakgllrmprqvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarvea
gdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgdrvapgdvlad
ggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealekelleemkh
psrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlndl
yrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtnpgsdrplrsl
tdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmee
kgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlveg
qsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsr
diilglyyitqvrkekkgaglefatpeealaahergevalnapikvagretsvgrlkyvf
anpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavedekvaweliqld
vpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigiddavipeekkqy
leeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfeenypfnplyvm
aqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfisshgarkggad
talrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslrlrkradieag
lygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrspltcqtrygvcqk
cygydlsmarpvsigeavgivaaqsigepgtqltmrtfhtggvagaaditqglprvielf
earrpkakaviseidgvvrieeteeklsvfvesegfskeyklpkearllvkdgdyveagq
pltrgaidphqlleakgpeaverylveeiqkvyraqgvklhdkhieivvrqmmkyvevtd
pgdsrllegqvlekwdvealnerliaegktpvawkpllmgvtksalstkswlsaasfqnt
thvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqktlkaieearkea

Sequence, based on observed residues (ATOM records):

>d4q5sd_ e.29.1.2 (D:) automated matches {Thermus thermophilus [TaxId: 300852]}
evrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgky
krqrfegkvcercgvevtksivrryrmghielatpaahiwfvkdvpskigtlldlsatel
eqvlyfskyivldpkgailngvpvekrqlltdeeyrelrygkqetyplppgvdalvkdge
evvkgqelapgvvsrldgvalyrfprrvrveyvkkeraglrlplaawvekeaykpgeila
elpepylfraeeegvvelkeleegaflvlrredepvatyflpvgmtplvvhgeivekgqp
laeakgllrmprqvraaqveaeeegetvyltlflewtepkdyrvqphmnvvvpegarvea
gdkivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevstgdrvapgdvlad
ggkvksdvygrvevdlvrnvvrvvesydidarmgaeaiqqllkeldlealekelleemkh
psrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlndl
yrrlinrnnrlkkllaqgapeiiirnekrmlqeavdalldngrrgapvtnpgsdrplrsl
tdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmee
kgiapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlveg
qsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsr
diilglyyitqvrkekkgaglefatpeealaahergevalnapikvagretsvgrlkyvf
anpdeallavahgivdlqdvvtvrymgkrletspgrilfarivaeavedekvaweliqld
vpqeknslkdlvyqaflrlgmektarlldalkyygftfsttsgitigiddavipeekkqy
leeadrkllqieqayemgfltdrerydqilqlwtettekvtqavfknfeenypfnplyvm
aqsgargnpqqirqlcglrglmqkpsgetfevpvrssfregltvleyfisshgarkggad
talrtadsgyltrklvdvtheivvreadcgttnyisvplfqpdevtrslrlrkradieag
lygrvlarevevlgvrleegrylsmddvhllikaaeageiqevpvrspltcqtrygvcqk
cygydlsmarpvsigeavgivaaqsigepgtqltmqglprvielfearrpkakaviseid
gvvrieeteeklsvfvesegfskeyklpkearllvkdgdyveagqpltrgaidphqllea
kgpeaverylveeiqkvyraqgvklhdkhieivvrqmmkyvevtdpgdsrllegqvlekw
dvealnerliaegktpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkde
liglkenvilgrlipagtgsdfvrftqvvdqktlkaieearkea

Timeline for d4q5sd_:

• d4q5sd_ first appeared in SCOPe 2.04
  
• d4q5sd_ appears in SCOPe 2.06
  
• d4q5sd_ appears in the current release, SCOPe 2.08