Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1949014Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1954356Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
    Multidomain subunits of complex domain organization
  4. 1954357Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families) (S)
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
  5. 1954444Family e.29.1.2: RNA-polymerase beta-prime [64490] (3 proteins)
  6. 1954506Protein automated matches [254473] (5 species)
    not a true protein

Species:

  1. 1954507Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255953] (3 PDB entries)
    1. Domain for 3m3y:
    2. Domain for 3s1m:
    3. Domain for 3s1n:
  2. 1954511Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256074] (1 PDB entry)
  3. 1954513Thermus thermophilus HB8 [TaxId:300852] [255520] (3 PDB entries)
    1. Domains for 2o5j:
      1. 1954514Domain d2o5jd_: 2o5j D: [148606]
        Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
      2. 1954515Domain d2o5jn_: 2o5j N: [148608]
        Other proteins in same PDB: d2o5jc_, d2o5je_, d2o5jm_, d2o5jo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, zn
    2. Domains for 2ppb:
      1. 1954516Domain d2ppbd_: 2ppb D: [149754]
        Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
      2. 1954517Domain d2ppbn_: 2ppb N: [149756]
        Other proteins in same PDB: d2ppbc_, d2ppbe_, d2ppbm_, d2ppbo_
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with apc, mg, std, zn
    3. Domains for 3dxj:
      1. 1954518Domain d3dxjd_: 3dxj D: [157928]
        Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
      2. 1954519Domain d3dxjn_: 3dxj N: [157931]
        Other proteins in same PDB: d3dxjc_, d3dxje_, d3dxjf1, d3dxjf2, d3dxjf3, d3dxjm_, d3dxjo_, d3dxjp1, d3dxjp2, d3dxjp3
        automated match to d4g7od_
        protein/DNA complex; protein/RNA complex; complexed with mg, mpd, ne6, po4, zn
  4. 1954520Thermus thermophilus [TaxId:274] [255019] (1 PDB entry)
  5. 1954523Thermus thermophilus [TaxId:300852] [257261] (2 PDB entries)
    1. Domain for 4oio:
    2. Domain for 4q5s:

More info for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime

Timeline for Protein automated matches from e.29.1.2: RNA-polymerase beta-prime: