SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families)

there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules

Family c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module [88741] (5 proteins)
parent family to TK and PFOR
heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
automatically mapped to Pfam PF02779

Protein automated matches [254489] (1 species)
not a true protein

Species:

Pseudomonas putida [TaxId:303] [255058] (1 PDB entry)
- Domains for 2bp7:
  1. Domain d2bp7b1: 2bp7 B:2-205 [128927]
    Other proteins in same PDB: d2bp7a_, d2bp7b2, d2bp7c_, d2bp7d2, d2bp7e_, d2bp7f2, d2bp7g_, d2bp7h2
    automated match to d1qs0b1
  2. Domain d2bp7d1: 2bp7 D:2-205 [128930]
    Other proteins in same PDB: d2bp7a_, d2bp7b2, d2bp7c_, d2bp7d2, d2bp7e_, d2bp7f2, d2bp7g_, d2bp7h2
    automated match to d1qs0b1
  3. Domain d2bp7f1: 2bp7 F:2-205 [128933]
    Other proteins in same PDB: d2bp7a_, d2bp7b2, d2bp7c_, d2bp7d2, d2bp7e_, d2bp7f2, d2bp7g_, d2bp7h2
    automated match to d1qs0b1
  4. Domain d2bp7h1: 2bp7 H:2-205 [128936]
    Other proteins in same PDB: d2bp7a_, d2bp7b2, d2bp7c_, d2bp7d2, d2bp7e_, d2bp7f2, d2bp7g_, d2bp7h2
    automated match to d1qs0b1

More info for Protein automated matches from c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module

Timeline for Protein automated matches from c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module:

Protein automated matches from c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module first appeared in SCOPe 2.04
Protein automated matches from c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module appears in SCOPe 2.07