SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)
Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
Protein automated matches [254484] (3 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [255048] (4 PDB entries)
1. Domain for 2bcr:
  - Domain d2bcra3: 2bcr A:386-575 [128309]
    Other proteins in same PDB: d2bcra1, d2bcra2
    automated match to d2bcqa3
    protein/DNA complex; complexed with edo, mg, na, ppv
2. Domain for 2bcs:
  - Domain d2bcsa3: 2bcs A:386-575 [128312]
    Other proteins in same PDB: d2bcsa1, d2bcsa2
    automated match to d2bcva3
    protein/DNA complex; complexed with mg, na, ppv
3. Domain for 2bcu:
  - Domain d2bcua3: 2bcu A:386-575 [128315]
    Other proteins in same PDB: d2bcua1, d2bcua2
    automated match to d2bcva3
    protein/DNA complex; complexed with na, ppv
4. Domain for 2bcv:
  - Domain d2bcva3: 2bcv A:386-575 [128318]
    Other proteins in same PDB: d2bcva1, d2bcva2
    automated match to d2bcva3
    protein/DNA complex; complexed with mg, na, ttp
Mouse (Mus musculus) [TaxId:10090] [256295] (28 PDB entries)
1. Domain for 4i27:
  - Domain d4i27a3: 4i27 A:303-510 [252548]
    Other proteins in same PDB: d4i27a1, d4i27a2
    automated match to d1jmsa4
    protein/DNA complex; complexed with d3t, mg, na
2. Domain for 4i28:
  - Domain d4i28a3: 4i28 A:303-510 [252551]
    Other proteins in same PDB: d4i28a1, d4i28a2
    automated match to d1jmsa4
    protein/DNA complex; complexed with mg, na, zn
3. Domain for 4i29:
  - Domain d4i29a3: 4i29 A:303-509 [252554]
    Other proteins in same PDB: d4i29a1, d4i29a2
    automated match to d1jmsa4
    protein/DNA complex; complexed with mn, na
4. Domain for 4i2a:
  - Domain d4i2aa3: 4i2a A:303-510 [252557]
    Other proteins in same PDB: d4i2aa1, d4i2aa2
    automated match to d1jmsa4
    protein/DNA complex; complexed with mg, na
5. Domain for 4i2b:
  - Domain d4i2ba3: 4i2b A:303-510 [252560]
    Other proteins in same PDB: d4i2ba1, d4i2ba2
    automated match to d1jmsa4
    protein/DNA complex; complexed with apc, mg, na
6. Domain for 4i2c:
  - Domain d4i2ca3: 4i2c A:303-510 [252563]
    Other proteins in same PDB: d4i2ca1, d4i2ca2
    automated match to d1jmsa4
    protein/DNA complex; complexed with apc, mn, na
7. Domain for 4i2d:
  - Domain d4i2da3: 4i2d A:303-510 [252566]
    Other proteins in same PDB: d4i2da1, d4i2da2
    automated match to d1jmsa4
    complexed with apc, mg, na, zn
8. Domain for 4i2e:
  - Domain d4i2ea3: 4i2e A:303-510 [252569]
    Other proteins in same PDB: d4i2ea1, d4i2ea2
    automated match to d1jmsa4
    protein/DNA complex; complexed with apc, co, na
9. Domain for 4i2f:
  - Domain d4i2fa3: 4i2f A:303-510 [252572]
    Other proteins in same PDB: d4i2fa1, d4i2fa2
    automated match to d1jmsa4
    protein/DNA complex; complexed with mg, na, zn
10. Domain for 4i2g:
  - Domain d4i2ga3: 4i2g A:303-510 [252575]
    Other proteins in same PDB: d4i2ga1, d4i2ga2
    automated match to d1jmsa4
    protein/DNA complex; complexed with co, mg, na
11. Domain for 4i2h:
  - Domain d4i2ha3: 4i2h A:303-510 [252578]
    Other proteins in same PDB: d4i2ha1, d4i2ha2
    automated match to d1jmsa4
    protein/DNA complex; complexed with apc, mg, na, zn
12. Domain for 4i2i:
  - Domain d4i2ia3: 4i2i A:303-510 [252581]
    Other proteins in same PDB: d4i2ia1, d4i2ia2
    automated match to d1jmsa4
    complexed with ap5, mg, zn
13. Domain for 4i2j:
  - Domain d4i2ja3: 4i2j A:303-510 [252584]
    Other proteins in same PDB: d4i2ja1, d4i2ja2
    automated match to d1jmsa4
    complexed with dcp, zn
14. Domain for 4iqt:
  - Domain d4iqta3: 4iqt A:303-510 [252674]
    Other proteins in same PDB: d4iqta1, d4iqta2
    automated match to d1jmsa4
    complexed with 1fo
15. Domain for 4iqu:
  - Domain d4iqua3: 4iqu A:303-510 [252677]
    Other proteins in same PDB: d4iqua1, d4iqua2
    automated match to d1jmsa4
    complexed with 1fq, na
16. Domain for 4iqv:
  - Domain d4iqva3: 4iqv A:303-510 [252680]
    Other proteins in same PDB: d4iqva1, d4iqva2
    automated match to d1jmsa4
    protein/DNA complex; complexed with 1fo, na
17. Domain for 4iqw:
  - Domain d4iqwa3: 4iqw A:303-510 [252683]
    Other proteins in same PDB: d4iqwa1, d4iqwa2
    automated match to d1jmsa4
    protein/DNA complex; complexed with 1fq, na
18. Domain for 4qz8:
  - Domain d4qz8a3: 4qz8 A:303-510 [273688]
    Other proteins in same PDB: d4qz8a1, d4qz8a2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na
19. Domain for 4qz9:
  - Domain d4qz9a3: 4qz9 A:303-510 [273691]
    Other proteins in same PDB: d4qz9a1, d4qz9a2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na
20. Domain for 4qza:
  - Domain d4qzaa3: 4qza A:303-510 [273695]
    Other proteins in same PDB: d4qzaa1, d4qzaa2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na
21. Domain for 4qzb:
  - Domain d4qzba3: 4qzb A:303-510 [273697]
    Other proteins in same PDB: d4qzba1, d4qzba2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na
22. Domain for 4qzc:
  - Domain d4qzca3: 4qzc A:303-510 [273700]
    Other proteins in same PDB: d4qzca1, d4qzca2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
23. Domain for 4qzd:
  - Domain d4qzda3: 4qzd A:303-510 [273703]
    Other proteins in same PDB: d4qzda1, d4qzda2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
24. Domain for 4qze:
  - Domain d4qzea3: 4qze A:303-510 [273715]
    Other proteins in same PDB: d4qzea1, d4qzea2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
25. Domain for 4qzf:
  - Domain d4qzfa3: 4qzf A:303-510 [273706]
    Other proteins in same PDB: d4qzfa1, d4qzfa2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
26. Domain for 4qzg:
  - Domain d4qzga3: 4qzg A:303-510 [273709]
    Other proteins in same PDB: d4qzga1, d4qzga2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
27. Domain for 4qzh:
  - Domain d4qzha3: 4qzh A:303-510 [273712]
    Other proteins in same PDB: d4qzha1, d4qzha2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na; mutant
28. Domain for 4qzi:
  - Domain d4qzia3: 4qzi A:303-510 [273718]
    Other proteins in same PDB: d4qzia1, d4qzia2
    automated match to d1jmsa4
    protein/DNA complex; complexed with dct, mg, na, zn; mutant
Norway rat (Rattus norvegicus) [TaxId:10116] [255608] (1 PDB entry)
- Domain for 2van:
  - Domain d2vana2: 2van A:149-335 [152827]
    Other proteins in same PDB: d2vana1
    automated match to d1zqwa2

More info for Protein automated matches from d.218.1.2: DNA polymerase beta-like

Timeline for Protein automated matches from d.218.1.2: DNA polymerase beta-like:

Protein automated matches from d.218.1.2: DNA polymerase beta-like first appeared in SCOPe 2.04
Protein automated matches from d.218.1.2: DNA polymerase beta-like appears in SCOPe 2.06
Protein automated matches from d.218.1.2: DNA polymerase beta-like appears in the current release, SCOPe 2.08