PDB entry 4i28

View 4i28 on RCSB PDB site
Description: Binary complex of mouse TdT with ssDNA and Zn++
Class: transferase/DNA
Keywords: Terminal transferase, TRANSFERASE-DNA complex
Deposited on 2012-11-21, released 2013-07-24
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-11-13, with a file datestamp of 2013-11-08.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.165
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA nucleotidylexotransferase
    Species: Mus musculus [TaxId:10090]
    Gene: DNTT, TDT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4i28a1, d4i28a2, d4i28a3
  • Chain 'C':
    Compound: 5'-d(*ap*ap*ap*ap*a)-3'
  • Heterogens: NA, ZN, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4i28A (A:)
    mgsshhhhhhssglvprgshmspspvpgsqnvpapavkkisqyacqrrttlnnynqlftd
    aldilaendelrenegsclafmrassvlkslpfpitsmkdtegipclgdkvksiiegiie
    dgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqk
    agflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflits
    peatedeeqqllhkvtdfwkqqglllycdilestfekfkqpsrkvdaldhfqkcflilkl
    dhgrvhseksgqqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkm
    mldnhalydrtkrvfleaeseeeifahlgldyiepwerna
    

    Sequence, based on observed residues (ATOM records): (download)
    >4i28A (A:)
    kisqyacqrrttlnnynqlftdaldilaendelrenegsclafmrassvlkslpfpitsm
    kdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwfr
    mgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdalv
    tmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfwkqqglllycdilestfekf
    kqpsldhfqkcflilkldhgrvhsekgkgwkairvdlvmcpydrrafallgwtgsrqfer
    dlrryatherkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna
    

  • Chain 'C':
    No sequence available.