SCOPe 2.08: Domain d4dc9b1: 4dc9 B:61-322

Lineage for d4dc9b1 (4dc9 B:61-322)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (22 proteins)
   core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest

6. Protein DNA repair protein Rad51, catalytic domain [82412] (7 species)

7. Species Methanococcus voltae [TaxId:2188] [110555] (14 PDB entries)
   Uniprot O73948

8. Domain d4dc9b1: 4dc9 B:61-322 [219676]
   Other proteins in same PDB: d4dc9a2, d4dc9b2, d4dc9c2, d4dc9d2, d4dc9e2, d4dc9f2
   automated match to d1n0wa_
   complexed with no3

Details for d4dc9b1

PDB Entry: 4dc9, 2.6 Å

PDB Description: Hexameric ring of Methanococcus voltae RadA

PDB Compounds: (B:) DNA repair and recombination protein radA

SCOPe Domain Sequences for d4dc9b1:

Sequence, based on SEQRES records:

>d4dc9b1 c.37.1.11 (B:61-322) DNA repair protein Rad51, catalytic domain {Methanococcus voltae [TaxId: 2188]}
dlgfksgidllkqrstvwklstssseldsvlggglesqsvtefagvfgsgktqimhqscv
nlqnpeflfydeeavskgevaqpkavyidtegtfrperimqmaehagidgqtvldntfva
raynsdmqmlfaekiedliqegnniklvvidsltstfrneytgrgklaerqqklgrhmat
lnkladlfncvvlvtnqvsakpdaffgmaeqaigghivghaatfrffvrkgkgdkrvakl
ydsphlpdaeaifritekgiqd

Sequence, based on observed residues (ATOM records):

>d4dc9b1 c.37.1.11 (B:61-322) DNA repair protein Rad51, catalytic domain {Methanococcus voltae [TaxId: 2188]}
dlgfksgidllkqrstvwklstssseldsvlggglesqsvtefagvfgsgktqimhqscv
nlqnpeflfydeeavskgevaqpkavyidtegtfrperimqmaehagidgqtvldntfva
raynsdmqmlfaekiedliqegnniklvvidsltstfrneytgrgklaerqqklgrhmat
lnkladlfncvvlvtnqvsaaeqaigghivghaatfrffvrkgkgdkrvaklydsphlpd
aeaifritekgiqd

Timeline for d4dc9b1:

• d4dc9b1 first appeared in SCOPe 2.03, called d4dc9b_
  
• d4dc9b1 appears in SCOPe 2.07