Lineage for d2nydb1 (2nyd B:1-366)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2923316Fold c.135: NIF3 (NGG1p interacting factor 3)-like [102704] (1 superfamily)
    consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest
  4. 2923317Superfamily c.135.1: NIF3 (NGG1p interacting factor 3)-like [102705] (2 families) (S)
    di-iron binding protein
  5. 2923343Family c.135.1.0: automated matches [191472] (1 protein)
    not a true family
  6. 2923344Protein automated matches [190747] (3 species)
    not a true protein
  7. 2923397Species Staphylococcus aureus [TaxId:158879] [187935] (2 PDB entries)
  8. 2923399Domain d2nydb1: 2nyd B:1-366 [166457]
    Other proteins in same PDB: d2nyda2, d2nydb2
    automated match to d2gx8a1
    complexed with zn

Details for d2nydb1

PDB Entry: 2nyd (more details), 2 Å

PDB Description: Crystal structure of Staphylococcus aureus hypothetical protein SA1388
PDB Compounds: (B:) UPF0135 protein SA1388

SCOPe Domain Sequences for d2nydb1:

Sequence, based on SEQRES records: (download)

>d2nydb1 c.135.1.0 (B:1-366) automated matches {Staphylococcus aureus [TaxId: 158879]}
mkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiekgynt
iishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvmglkn
isiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesegrgqfkpvgea
nptigqidkiedvdevkiefmidayqksraeqlikqyhpyetpvfdfieikqtslyglgv
maevdnqmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqqgadv
fvtgdikhhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveastint
dpfqyi

Sequence, based on observed residues (ATOM records): (download)

>d2nydb1 c.135.1.0 (B:1-366) automated matches {Staphylococcus aureus [TaxId: 158879]}
mkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiekgynt
iishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvmglkn
isiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesedvdevkiefmi
dayqksraeqlikqyhpyetpvfdfieikqtslyglgvmaevdnqmtledfaadikskln
ipsvrfvgesnqkikriaiiggsgigyeyqavqqgadvfvtgdikhhdaldakihgvnli
dinhyseyvmkeglktllmnwfniekinidveastintdpfqyi

SCOPe Domain Coordinates for d2nydb1:

Click to download the PDB-style file with coordinates for d2nydb1.
(The format of our PDB-style files is described here.)

Timeline for d2nydb1:

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Domains from same chain:
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d2nydb2