SCOPe 2.07: Domain d2nydb1: 2nyd B:1-366

Lineage for d2nydb1 (2nyd B:1-366)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.135: NIF3 (NGG1p interacting factor 3)-like [102704] (1 superfamily)
   consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest

4. Superfamily c.135.1: NIF3 (NGG1p interacting factor 3)-like [102705] (2 families)
   di-iron binding protein

5. Family c.135.1.0: automated matches [191472] (1 protein)
   not a true family

6. Protein automated matches [190747] (3 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:158879] [187935] (2 PDB entries)

8. Domain d2nydb1: 2nyd B:1-366 [166457]
   Other proteins in same PDB: d2nyda2, d2nydb2
   automated match to d2gx8a1
   complexed with zn

Details for d2nydb1

PDB Entry: 2nyd, 2 Å

PDB Description: Crystal structure of Staphylococcus aureus hypothetical protein SA1388

PDB Compounds: (B:) UPF0135 protein SA1388

SCOPe Domain Sequences for d2nydb1:

Sequence, based on SEQRES records:

>d2nydb1 c.135.1.0 (B:1-366) automated matches {Staphylococcus aureus [TaxId: 158879]}
mkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiekgynt
iishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvmglkn
isiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesegrgqfkpvgea
nptigqidkiedvdevkiefmidayqksraeqlikqyhpyetpvfdfieikqtslyglgv
maevdnqmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqqgadv
fvtgdikhhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveastint
dpfqyi

Sequence, based on observed residues (ATOM records):

>d2nydb1 c.135.1.0 (B:1-366) automated matches {Staphylococcus aureus [TaxId: 158879]}
mkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiekgynt
iishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvmglkn
isiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesedvdevkiefmi
dayqksraeqlikqyhpyetpvfdfieikqtslyglgvmaevdnqmtledfaadikskln
ipsvrfvgesnqkikriaiiggsgigyeyqavqqgadvfvtgdikhhdaldakihgvnli
dinhyseyvmkeglktllmnwfniekinidveastintdpfqyi

Timeline for d2nydb1:

• d2nydb1 first appeared in SCOPe 2.01, called d2nydb_
  
• d2nydb1 appears in SCOPe 2.06
  
• d2nydb1 appears in the current release, SCOPe 2.08