SCOPe 2.01: Domain d2nydb_: 2nyd B:

Lineage for d2nydb_ (2nyd B:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.135: NIF3 (NGG1p interacting factor 3)-like [102704] (1 superfamily)
   consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest

4. Superfamily c.135.1: NIF3 (NGG1p interacting factor 3)-like [102705] (2 families)
   di-iron binding protein

5. Family c.135.1.0: automated matches [191472] (1 protein)
   not a true family

6. Protein automated matches [190747] (2 species)
   not a true protein

7. Species Staphylococcus aureus [TaxId:158879] [187935] (2 PDB entries)

8. Domain d2nydb_: 2nyd B: [166457]
   automated match to d2gx8a1
   complexed with zn

Details for d2nydb_

PDB Entry: 2nyd, 2 Å

PDB Description: Crystal structure of Staphylococcus aureus hypothetical protein SA1388

PDB Compounds: (B:) UPF0135 protein SA1388

SCOPe Domain Sequences for d2nydb_:

Sequence, based on SEQRES records:

>d2nydb_ c.135.1.0 (B:) automated matches {Staphylococcus aureus [TaxId: 158879]}
amdpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiek
gyntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvm
glknisiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesegrgqfkp
vgeanptigqidkiedvdevkiefmidayqksraeqlikqyhpyetpvfdfieikqtsly
glgvmaevdnqmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqq
gadvfvtgdikhhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveas
tintdpfqyi

Sequence, based on observed residues (ATOM records):

>d2nydb_ c.135.1.0 (B:) automated matches {Staphylococcus aureus [TaxId: 158879]}
amdpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiek
gyntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvm
glknisiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesedvdevki
efmidayqksraeqlikqyhpyetpvfdfieikqtslyglgvmaevdnqmtledfaadik
sklnipsvrfvgesnqkikriaiiggsgigyeyqavqqgadvfvtgdikhhdaldakihg
vnlidinhyseyvmkeglktllmnwfniekinidveastintdpfqyi

Timeline for d2nydb_:

• d2nydb_ is new in SCOPe 2.01-stable
  
• d2nydb_ appears in SCOPe 2.02
  
• d2nydb_ appears in the current release, SCOPe 2.08, called d2nydb1