PDB entry 2nyd

View 2nyd on RCSB PDB site
Description: Crystal structure of Staphylococcus aureus hypothetical protein SA1388
Class: unknown function
Keywords: hypothetical protein sa1388, selenomethionine sad, unknown function
Deposited on 2006-11-20, released 2007-01-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.176
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UPF0135 protein SA1388
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: SA1388
    Database cross-references and differences (RAF-indexed):
    • Uniprot P67273 (4-369)
      • cloning artifact (2-3)
      • see remark 999 (35)
      • see remark 999 (118)
    Domains in SCOPe 2.08: d2nyda1, d2nyda2
  • Chain 'B':
    Compound: UPF0135 protein SA1388
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: SA1388
    Database cross-references and differences (RAF-indexed):
    • Uniprot P67273 (4-369)
      • cloning artifact (0-3)
      • see remark 999 (35)
      • see remark 999 (118)
    Domains in SCOPe 2.08: d2nydb1, d2nydb2
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2nydA (A:)
amdpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiek
gyntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvm
glknisiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesegrgqfkp
vgeanptigqidkiedvdevkiefmidayqksraeqlikqyhpyetpvfdfieikqtsly
glgvmaevdnqmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqq
gadvfvtgdikhhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveas
tintdpfqyi

    Sequence, based on observed residues (ATOM records): (download) 
    >2nydA (A:)
dpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiekgy
ntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvmgl
knisiinnqqdvyykvqefmidayqksraeqlikqtpvfdfieikqtslyglgvmaevdn
qmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqqgadvfvtgdi
khhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveastintdpfqyi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2nydB (B:)
amdpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiek
gyntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvm
glknisiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesegrgqfkp
vgeanptigqidkiedvdevkiefmidayqksraeqlikqyhpyetpvfdfieikqtsly
glgvmaevdnqmtledfaadiksklnipsvrfvgesnqkikriaiiggsgigyeyqavqq
gadvfvtgdikhhdaldakihgvnlidinhyseyvmkeglktllmnwfniekinidveas
tintdpfqyi

    Sequence, based on observed residues (ATOM records): (download) 
    >2nydB (B:)
amdpmkiadlmtlldhhvpfstaeswdnvglligdedvevtgvltaldctlevvneaiek
gyntiishhplifkgvtslkangygliirkliqhdinliamhtnldvnpygvnmmlakvm
glknisiinnqqdvyykvqtyipkdnvgpfkdklsenglaqegnyeycffesedvdevki
efmidayqksraeqlikqyhpyetpvfdfieikqtslyglgvmaevdnqmtledfaadik
sklnipsvrfvgesnqkikriaiiggsgigyeyqavqqgadvfvtgdikhhdaldakihg
vnlidinhyseyvmkeglktllmnwfniekinidveastintdpfqyi