SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.135: NIF3 (NGG1p interacting factor 3)-like [102704] (1 superfamily)
consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest

Superfamily c.135.1: NIF3 (NGG1p interacting factor 3)-like [102705] (2 families)
di-iron binding protein
Family c.135.1.0: automated matches [191472] (1 protein)
not a true family
Protein automated matches [190747] (3 species)
not a true protein

Species:

Methanocaldococcus jannaschii [TaxId:243232] [236411] (8 PDB entries)
1. Domains for 3wsd:
  1. Domain d3wsda_: 3wsd A: [265734]
    automated match to d3wsfa_
    complexed with cl, fe
  2. Domain d3wsdb_: 3wsd B: [265735]
    automated match to d3wsfa_
    complexed with cl, fe
  3. Domain d3wsdc_: 3wsd C: [265736]
    automated match to d3wsfa_
    complexed with cl, fe
  4. Domain d3wsdd_: 3wsd D: [265737]
    automated match to d3wsfa_
    complexed with cl, fe
  5. Domain d3wsde_: 3wsd E: [265738]
    automated match to d3wsfa_
    complexed with cl, fe
  6. Domain d3wsdf_: 3wsd F: [265739]
    automated match to d3wsfa_
    complexed with cl, fe
2. Domains for 3wse:
  1. Domain d3wsea1: 3wse A:3-249 [265740]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
  2. Domain d3wseb_: 3wse B: [265741]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
  3. Domain d3wsec_: 3wse C: [265742]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
  4. Domain d3wsed_: 3wse D: [265743]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
  5. Domain d3wsee_: 3wse E: [265744]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
  6. Domain d3wsef_: 3wse F: [265745]
    Other proteins in same PDB: d3wsea2
    automated match to d3wsfa_
    complexed with fe2, po4
3. Domains for 3wsf:
  1. Domain d3wsfa1: 3wsf A:3-249 [259312]
    Other proteins in same PDB: d3wsfa2
    automated match to d4iwga_
    complexed with cit, fe
  2. Domain d3wsfb_: 3wsf B: [259314]
    Other proteins in same PDB: d3wsfa2
    automated match to d4iwga_
    complexed with cit, fe
  3. Domain d3wsfc_: 3wsf C: [262444]
    Other proteins in same PDB: d3wsfa2
    automated match to d3wsfa_
    complexed with cit, fe
  4. Domain d3wsfd_: 3wsf D: [262445]
    Other proteins in same PDB: d3wsfa2
    automated match to d3wsfa_
    complexed with cit, fe
  5. Domain d3wsfe_: 3wsf E: [262446]
    Other proteins in same PDB: d3wsfa2
    automated match to d3wsfa_
    complexed with cit, fe
  6. Domain d3wsff_: 3wsf F: [262447]
    Other proteins in same PDB: d3wsfa2
    automated match to d3wsfa_
    complexed with cit, fe
4. Domains for 3wsg:
  1. Domain d3wsga1: 3wsg A:3-249 [265746]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
  2. Domain d3wsgb_: 3wsg B: [265747]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
  3. Domain d3wsgc_: 3wsg C: [265748]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
  4. Domain d3wsgd_: 3wsg D: [265749]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
  5. Domain d3wsge_: 3wsg E: [265750]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
  6. Domain d3wsgf_: 3wsg F: [265751]
    Other proteins in same PDB: d3wsga2
    automated match to d3wsfa_
    complexed with cit, fe2
5. Domains for 3wsh:
  1. Domain d3wsha_: 3wsh A: [265752]
    automated match to d3wsfa_
    complexed with fe, so4
  2. Domain d3wshb_: 3wsh B: [265753]
    automated match to d3wsfa_
    complexed with fe, so4
  3. Domain d3wshc_: 3wsh C: [265754]
    automated match to d3wsfa_
    complexed with fe, so4
  4. Domain d3wshd_: 3wsh D: [265755]
    automated match to d3wsfa_
    complexed with fe, so4
  5. Domain d3wshe_: 3wsh E: [265756]
    automated match to d3wsfa_
    complexed with fe, so4
  6. Domain d3wshf_: 3wsh F: [265757]
    automated match to d3wsfa_
    complexed with fe, so4
  7. Domain d3wshg_: 3wsh G: [265758]
    automated match to d3wsfa_
    complexed with fe, so4
  8. Domain d3wshh_: 3wsh H: [265759]
    automated match to d3wsfa_
    complexed with fe, so4
  9. Domain d3wshi_: 3wsh I: [265760]
    automated match to d3wsfa_
    complexed with fe, so4
  10. Domain d3wshj_: 3wsh J: [265761]
    automated match to d3wsfa_
    complexed with fe, so4
  11. Domain d3wshk_: 3wsh K: [265762]
    automated match to d3wsfa_
    complexed with fe, so4
  12. Domain d3wshl_: 3wsh L: [265763]
    automated match to d3wsfa_
    complexed with fe, so4
6. Domains for 3wsi:
  1. Domain d3wsia1: 3wsi A:3-249 [265764]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
  2. Domain d3wsib_: 3wsi B: [265765]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
  3. Domain d3wsic_: 3wsi C: [265766]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
  4. Domain d3wsid_: 3wsi D: [265767]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
  5. Domain d3wsie_: 3wsi E: [265768]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
  6. Domain d3wsif_: 3wsi F: [265769]
    Other proteins in same PDB: d3wsia2
    automated match to d3wsfa_
    complexed with fe2, po4
7. Domains for 4iwg:
  1. Domain d4iwga_: 4iwg A: [236412]
    automated match to d2yyba_
  2. Domain d4iwgb_: 4iwg B: [240270]
    automated match to d4iwga_
  3. Domain d4iwgc_: 4iwg C: [240271]
    automated match to d4iwga_
8. Domains for 4iwm:
  1. Domain d4iwma_: 4iwm A: [252738]
    automated match to d4iwga_
  2. Domain d4iwmb_: 4iwm B: [252739]
    automated match to d4iwga_
  3. Domain d4iwmc_: 4iwm C: [252740]
    automated match to d4iwga_
  4. Domain d4iwmd_: 4iwm D: [252741]
    automated match to d4iwga_
  5. Domain d4iwme_: 4iwm E: [252742]
    automated match to d4iwga_
  6. Domain d4iwmf_: 4iwm F: [252743]
    automated match to d4iwga_
Staphylococcus aureus [TaxId:158879] [187935] (2 PDB entries)
1. Domains for 2nyd:
  1. Domain d2nyda1: 2nyd A:1-366 [166456]
    Other proteins in same PDB: d2nyda2, d2nydb2
    automated match to d2gx8a1
    complexed with zn
  2. Domain d2nydb1: 2nyd B:1-366 [166457]
    Other proteins in same PDB: d2nyda2, d2nydb2
    automated match to d2gx8a1
    complexed with zn
2. Domains for 3lnl:
  1. Domain d3lnla1: 3lnl A:5-370 [180413]
    Other proteins in same PDB: d3lnla2, d3lnlb2
    automated match to d2gx8a1
    complexed with b3p, zn
  2. Domain d3lnlb1: 3lnl B:5-370 [180414]
    Other proteins in same PDB: d3lnla2, d3lnlb2
    automated match to d2gx8a1
    complexed with b3p, zn
Thermus thermophilus HB8 [TaxId:300852] [188432] (1 PDB entry)
- Domains for 2yyb:
  1. Domain d2yyba_: 2yyb A: [170929]
    automated match to d1nmoa_
  2. Domain d2yybb_: 2yyb B: [170930]
    automated match to d1nmoa_

More info for Protein automated matches from c.135.1.0: automated matches

Timeline for Protein automated matches from c.135.1.0: automated matches:

Protein automated matches from c.135.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.135.1.0: automated matches appears in SCOPe 2.07