Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2151827Fold c.135: NIF3 (NGG1p interacting factor 3)-like [102704] (1 superfamily)
    consist of two intertwined domains; duplication: contains two structural repeats of alpha-beta-(beta-alpha)3 motif with mixed beta-sheet, order: 1432, strand 1 is antiparallel to the rest
  4. 2151828Superfamily c.135.1: NIF3 (NGG1p interacting factor 3)-like [102705] (2 families) (S)
    di-iron binding protein
  5. 2151854Family c.135.1.0: automated matches [191472] (1 protein)
    not a true family
  6. 2151855Protein automated matches [190747] (3 species)
    not a true protein

Species:

  1. 2151856Methanocaldococcus jannaschii [TaxId:243232] [236411] (8 PDB entries)
    1. Domains for 3wsd:
      1. 2151875Domain d3wsda_: 3wsd A: [265734]
        automated match to d3wsfa_
        complexed with cl, fe
      2. 2151876Domain d3wsdb_: 3wsd B: [265735]
        automated match to d3wsfa_
        complexed with cl, fe
      3. 2151877Domain d3wsdc_: 3wsd C: [265736]
        automated match to d3wsfa_
        complexed with cl, fe
      4. 2151878Domain d3wsdd_: 3wsd D: [265737]
        automated match to d3wsfa_
        complexed with cl, fe
      5. 2151879Domain d3wsde_: 3wsd E: [265738]
        automated match to d3wsfa_
        complexed with cl, fe
      6. 2151880Domain d3wsdf_: 3wsd F: [265739]
        automated match to d3wsfa_
        complexed with cl, fe
    2. Domains for 3wse:
      1. 2151884Domain d3wsea_: 3wse A: [265740]
        automated match to d3wsfa_
        complexed with fe2, po4
      2. 2151885Domain d3wseb_: 3wse B: [265741]
        automated match to d3wsfa_
        complexed with fe2, po4
      3. 2151886Domain d3wsec_: 3wse C: [265742]
        automated match to d3wsfa_
        complexed with fe2, po4
      4. 2151887Domain d3wsed_: 3wse D: [265743]
        automated match to d3wsfa_
        complexed with fe2, po4
      5. 2151888Domain d3wsee_: 3wse E: [265744]
        automated match to d3wsfa_
        complexed with fe2, po4
      6. 2151889Domain d3wsef_: 3wse F: [265745]
        automated match to d3wsfa_
        complexed with fe2, po4
    3. Domains for 3wsf:
      1. 2151863Domain d3wsfa_: 3wsf A: [259312]
        automated match to d4iwga_
        complexed with cit, fe
      2. 2151864Domain d3wsfb_: 3wsf B: [259314]
        automated match to d4iwga_
        complexed with cit, fe
      3. 2151865Domain d3wsfc_: 3wsf C: [262444]
        automated match to d3wsfa_
        complexed with cit, fe
      4. 2151866Domain d3wsfd_: 3wsf D: [262445]
        automated match to d3wsfa_
        complexed with cit, fe
      5. 2151867Domain d3wsfe_: 3wsf E: [262446]
        automated match to d3wsfa_
        complexed with cit, fe
      6. 2151868Domain d3wsff_: 3wsf F: [262447]
        automated match to d3wsfa_
        complexed with cit, fe
    4. Domains for 3wsg:
      1. 2151857Domain d3wsga_: 3wsg A: [265746]
        automated match to d3wsfa_
        complexed with cit, fe2
      2. 2151858Domain d3wsgb_: 3wsg B: [265747]
        automated match to d3wsfa_
        complexed with cit, fe2
      3. 2151859Domain d3wsgc_: 3wsg C: [265748]
        automated match to d3wsfa_
        complexed with cit, fe2
      4. 2151860Domain d3wsgd_: 3wsg D: [265749]
        automated match to d3wsfa_
        complexed with cit, fe2
      5. 2151861Domain d3wsge_: 3wsg E: [265750]
        automated match to d3wsfa_
        complexed with cit, fe2
      6. 2151862Domain d3wsgf_: 3wsg F: [265751]
        automated match to d3wsfa_
        complexed with cit, fe2
    5. Domains for 3wsh:
      1. 2151890Domain d3wsha_: 3wsh A: [265752]
        automated match to d3wsfa_
        complexed with fe, so4
      2. 2151891Domain d3wshb_: 3wsh B: [265753]
        automated match to d3wsfa_
        complexed with fe, so4
      3. 2151892Domain d3wshc_: 3wsh C: [265754]
        automated match to d3wsfa_
        complexed with fe, so4
      4. 2151893Domain d3wshd_: 3wsh D: [265755]
        automated match to d3wsfa_
        complexed with fe, so4
      5. 2151894Domain d3wshe_: 3wsh E: [265756]
        automated match to d3wsfa_
        complexed with fe, so4
      6. 2151895Domain d3wshf_: 3wsh F: [265757]
        automated match to d3wsfa_
        complexed with fe, so4
      7. 2151896Domain d3wshg_: 3wsh G: [265758]
        automated match to d3wsfa_
        complexed with fe, so4
      8. 2151897Domain d3wshh_: 3wsh H: [265759]
        automated match to d3wsfa_
        complexed with fe, so4
      9. 2151898Domain d3wshi_: 3wsh I: [265760]
        automated match to d3wsfa_
        complexed with fe, so4
      10. 2151899Domain d3wshj_: 3wsh J: [265761]
        automated match to d3wsfa_
        complexed with fe, so4
      11. 2151900Domain d3wshk_: 3wsh K: [265762]
        automated match to d3wsfa_
        complexed with fe, so4
      12. 2151901Domain d3wshl_: 3wsh L: [265763]
        automated match to d3wsfa_
        complexed with fe, so4
    6. Domains for 3wsi:
      1. 2151869Domain d3wsia_: 3wsi A: [265764]
        automated match to d3wsfa_
        complexed with fe2, po4
      2. 2151870Domain d3wsib_: 3wsi B: [265765]
        automated match to d3wsfa_
        complexed with fe2, po4
      3. 2151871Domain d3wsic_: 3wsi C: [265766]
        automated match to d3wsfa_
        complexed with fe2, po4
      4. 2151872Domain d3wsid_: 3wsi D: [265767]
        automated match to d3wsfa_
        complexed with fe2, po4
      5. 2151873Domain d3wsie_: 3wsi E: [265768]
        automated match to d3wsfa_
        complexed with fe2, po4
      6. 2151874Domain d3wsif_: 3wsi F: [265769]
        automated match to d3wsfa_
        complexed with fe2, po4
    7. Domains for 4iwg:
      1. 2151881Domain d4iwga_: 4iwg A: [236412]
        automated match to d2yyba_
      2. 2151882Domain d4iwgb_: 4iwg B: [240270]
        automated match to d4iwga_
      3. 2151883Domain d4iwgc_: 4iwg C: [240271]
        automated match to d4iwga_
    8. Domains for 4iwm:
      1. 2151902Domain d4iwma_: 4iwm A: [252738]
        automated match to d4iwga_
      2. 2151903Domain d4iwmb_: 4iwm B: [252739]
        automated match to d4iwga_
      3. 2151904Domain d4iwmc_: 4iwm C: [252740]
        automated match to d4iwga_
      4. 2151905Domain d4iwmd_: 4iwm D: [252741]
        automated match to d4iwga_
      5. 2151906Domain d4iwme_: 4iwm E: [252742]
        automated match to d4iwga_
      6. 2151907Domain d4iwmf_: 4iwm F: [252743]
        automated match to d4iwga_
  2. 2151908Staphylococcus aureus [TaxId:158879] [187935] (2 PDB entries)
    1. Domains for 2nyd:
      1. 2151911Domain d2nyda1: 2nyd A:1-366 [166456]
        Other proteins in same PDB: d2nyda2, d2nydb2
        automated match to d2gx8a1
        complexed with zn
      2. 2151912Domain d2nydb1: 2nyd B:1-366 [166457]
        Other proteins in same PDB: d2nyda2, d2nydb2
        automated match to d2gx8a1
        complexed with zn
    2. Domains for 3lnl:
      1. 2151909Domain d3lnla1: 3lnl A:5-370 [180413]
        Other proteins in same PDB: d3lnla2, d3lnlb2
        automated match to d2gx8a1
        complexed with b3p, zn
      2. 2151910Domain d3lnlb1: 3lnl B:5-370 [180414]
        Other proteins in same PDB: d3lnla2, d3lnlb2
        automated match to d2gx8a1
        complexed with b3p, zn
  3. 2151913Thermus thermophilus HB8 [TaxId:300852] [188432] (1 PDB entry)

More info for Protein automated matches from c.135.1.0: automated matches

Timeline for Protein automated matches from c.135.1.0: automated matches: