SCOPe 2.08: Domain d2phda1: 2phd A:17-367

Lineage for d2phda1 (2phd A:17-367)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

5. Family b.82.1.23: Gentisate 1,2-dioxygenase-like [159299] (2 proteins)
   Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin; homotetramer

6. Protein Gentisate 1,2-dioxygenase [159300] (3 species)
   Salicylate 1,2-dioxygenase

7. Species Pseudaminobacter salicylatoxidans [TaxId:93369] [159303] (1 PDB entry)
   Uniprot Q67FT0 17-367

8. Domain d2phda1: 2phd A:17-367 [149468]
   Other proteins in same PDB: d2phdb_, d2phdc_, d2phdd_
   complexed with act, cl, fe

Details for d2phda1

PDB Entry: 2phd, 2.9 Å

PDB Description: crystal structure determination of a salicylate 1,2-dioxygenase from pseudaminobacter salicylatoxidans

PDB Compounds: (A:) Gentisate 1,2-dioxygenase

SCOPe Domain Sequences for d2phda1:

Sequence, based on SEQRES records:

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
pkdtpelralyksfeeesiiplwtqlgdlmpihpkskavphvwkwstllrlarksgelvp
vgrggerralglanpglggnayisptmwagiqylgpretapehrhsqnafrfvvegegvw
tvvngdpvrmsrgdllltpgwcfhghmndtdqpmawidgldipfsqqmdvgffefgsdrv
tdyatpnfsrgerlwchpglrplsglqntvaspigayrweftdralteqllledegqpat
vapghaairyvnpttggdvmptlrcefhrlragtetatrnevgstvfqvfegagavvmng
ettklekgdmfvvpswvpwslqaetqfdlfrfsdapimealsfmrtkiegq

Sequence, based on observed residues (ATOM records):

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
pkdtpelralyksfeeesiiplwtqlgdlmpihpkskavphvwkwstllrlarksgelvp
vgrggerralglanpglggnayisptmwagiqylgpretapehrhsqnafrfvvegegvw
tvvngdpvrmsrgdllltpgwcfhghmndtdqpmawidgldipfsqqmdvgffefgsdtd
yatpnfsrgerlwchpglrplsglqntvaspigayrweftdralteqllledegqpatva
pghaairyvnpttggdvmptlrcefhrlragtetatrnevgstvfqvfegagavvmnget
tklekgdmfvvpswvpwslqaetqfdlfrfsdapimealsfmrtkiegq

Timeline for d2phda1:

• d2phda1 first appeared in SCOP 1.75
  
• d2phda1 appears in SCOPe 2.07