Lineage for Superfamily b.82.1: RmlC-like cupins

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070015Superfamily b.82.1: RmlC-like cupins [51182] (25 families) (S)

Families:

  1. 2070016b.82.1.1: dTDP-sugar isomerase [51183] (5 protein domains)
  2. 2070093b.82.1.2: Germin/Seed storage 7S protein [51187] (5 protein domains)
  3. 2070220b.82.1.3: Type I phosphomannose isomerase [51191] (3 protein domains)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  4. 2070231b.82.1.4: Homogentisate dioxygenase [51194] (1 protein)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the C-terminal domain similar to the metal-binding site of germin
    automatically mapped to Pfam PF04209
  5. 2070236b.82.1.5: Quercetin 2,3-dioxygenase-like [75035] (3 protein domains)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  6. 2070267b.82.1.6: Acireductone dioxygenase [82191] (2 protein domains)
    automatically mapped to Pfam PF03079
  7. 2070276b.82.1.7: Glucose-6-phosphate isomerase, GPI [89403] (2 protein domains)
    automatically mapped to Pfam PF06560
  8. 2070314b.82.1.8: Hypothetical protein TM1112 [89406] (1 protein)
  9. 2070321b.82.1.9: TM1287-like [89409] (5 protein domains)
  10. 2070342b.82.1.10: TM1459-like [101976] (3 protein domains)
  11. 2070385b.82.1.11: YlbA-like [101979] (4 protein domains)
    Pfam PF05899; formerly pfam06038; duplication: consists of two germin-like domains
  12. 2070401b.82.1.12: Pirin-like [101984] (3 protein domains)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
  13. 2070417b.82.1.13: KduI-like [110318] (1 protein)
    Pfam PF04962: duplication: consists of two germin-like domains
  14. 2070435b.82.1.14: Ureidoglycolate hydrolase AllA [117312] (1 protein)
    Pfam PF04115; beta-hairpin-swapped dimeric protein of the germin-like fold
  15. 2070449b.82.1.15: Probable transcriptional regulator VC1968, C-terminal domain [117315] (1 protein)
  16. 2070453b.82.1.16: YML079-like [117318] (4 protein domains)
    Pfam PF06172; DUF985
  17. 2070485b.82.1.17: PA5104-like [141609] (2 protein domains)
    Pfam PF05962; DUF886; duplication: consists of two germin-like domains; overall structural similarity to the YlbA-like family (101979) except a deletion in the interdomain linker region
  18. 2070494b.82.1.18: MJ0764-like [141612] (1 protein)
    automatically mapped to Pfam PF04962
  19. 2070498b.82.1.19: Cysteine dioxygenase type I [141615] (2 protein domains)
    Pfam PF05995, CDO_I
  20. 2070540b.82.1.20: 3-hydroxyanthranilic acid dioxygenase-like [141618] (2 protein domains)
    Pfam PF06052; 3-HAO
  21. 2070555b.82.1.21: Acetylacetone-cleaving enzyme-like [159293] (2 protein domains)
    PfamB PB026844
  22. 2070566b.82.1.22: VPA0057-like [159296] (1 protein)
    Pfam PF06865; DUF1255; non-canonical dimerisation mode
  23. 2070570b.82.1.23: Gentisate 1,2-dioxygenase-like [159299] (2 protein domains)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin; homotetramer
  24. 2070596b.82.1.24: EutQ-like [159304] (1 protein)
    Pfam PF06249
  25. 2070601b.82.1.0: automated matches [191354] (1 protein)
    not a true family

More info for Superfamily b.82.1: RmlC-like cupins

Timeline for Superfamily b.82.1: RmlC-like cupins: