SCOPe 2.08: Family b.82.1.2: Germin/Seed storage 7S protein

Lineage for Family b.82.1.2: Germin/Seed storage 7S protein

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

5. Family b.82.1.2: Germin/Seed storage 7S protein [51187] (5 proteins)
   has additional insertions and/or extensions that are not grouped together
   

Proteins:

1. Auxin binding protein [75030] (1 species)

   • Species Maize (Zea mays) [TaxId:4577] [75031] (2 PDB entries)

2. Germin [63853] (1 species)
   Metal (manganese)-binding protein with oxalate oxidase and superoxide dismutase activities; homohexamer

   • Species Barley (Hordeum vulgare) [TaxId:4513] [63854] (4 PDB entries)

3. Oxalate decarboxylase OxdC (YvrK) [75033] (1 species)
   duplication: consists of two germin-like metal-ion binding domains

   • Species Bacillus subtilis [TaxId:1423] [75034] (4 PDB entries)

4. Seed storage 7S protein [51188] (6 species)
   duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer

   1. Species French bean (Phaseolus vulgaris), phaseolin [TaxId:3885] [51189] (2 PDB entries)

   2. Species Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId:3823] [51190] (11 PDB entries)

   3. Species Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId:3847] [110313] (1 PDB entry)
      Uniprot Q7XXT2 204-621

   4. Species Soybean (Glycine max), beta-conglycinin beta subunit [TaxId:3847] [109608] (3 PDB entries)
      Uniprot P25974

   5. Species Soybean (Glycine max), glycinin A3B4 [TaxId:3847] [89412] (1 PDB entry)

   6. Species Soybean (Glycine max), proglycinin [TaxId:3847] [69345] (3 PDB entries)

5. automated matches [190784] (2 species)
   not a true protein

   1. Species Bacillus subtilis [TaxId:1423] [188035] (8 PDB entries)

   2. Species Bacillus subtilis [TaxId:224308] [237304] (2 PDB entries)

More info for Family b.82.1.2: Germin/Seed storage 7S protein

Timeline for Family b.82.1.2: Germin/Seed storage 7S protein:

• Family b.82.1.2: Germin/Seed storage 7S protein first appeared (with stable ids) in SCOP 1.55
  
• Family b.82.1.2: Germin/Seed storage 7S protein appears in SCOPe 2.07