Lineage for d2hbma1 (2hbm A:421-516)

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.60: SAM domain-like [47768] (17 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily a.60.8: HRDC-like [47819] (5 families) (S)
  5. Family a.60.8.4: EXOSC10 HRDC domain-like [140646] (2 proteins)
  6. Protein Exosome complex exonuclease RRP6 domain [140647] (1 species)
  7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [140648] (4 PDB entries)
    Uniprot Q12149 421-516
  8. Domain d2hbma1: 2hbm A:421-516 [136317]
    Other proteins in same PDB: d2hbma2, d2hbma3
    automated match to d2hbja1
    protein/RNA complex; complexed with mn, u, zn

Details for d2hbma1

PDB Entry: 2hbm (more details), 2.7 Å

PDB Description: structure of the yeast nuclear exosome component, rrp6p, reveals an interplay between the active site and the hrdc domain; protein in complex with mn, zn, and ump
PDB Compounds: (A:) Exosome complex exonuclease RRP6

SCOPe Domain Sequences for d2hbma1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2hbma1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
kespwkilmyqynipperevlvrelyqwrdliarrddesprfvmpnqllaalvaytptdv
igvvsltngvtehvrqnakllanlirdalrnikntn

SCOPe Domain Coordinates for d2hbma1 are not available.

Timeline for d2hbma1:

View in 3D
Domains from same chain:
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d2hbma2, d2hbma3