SCOPe 2.08: Domain d1yhcb1: 1yhc B:2-127

Lineage for d1yhcb1 (1yhc B:2-127)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
   core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover

4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)

5. Family d.14.1.7: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC [89827] (2 proteins)
   duplication; there are two structural repeats of this fold; each repeat is elaborated with additional structures forming the active site

6. Protein UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC [89828] (1 species)

7. Species Aquifex aeolicus [TaxId:63363] [89829] (18 PDB entries)
   Uniprot O67648 3-270

8. Domain d1yhcb1: 1yhc B:2-127 [123170]
   automated match to d1p42a1
   complexed with cac, cl, gol, pam, so4, zn

Details for d1yhcb1

PDB Entry: 1yhc, 2.1 Å

PDB Description: crystal structure of aquifex aeolicus lpxc deacetylase complexed with cacodylate

PDB Compounds: (B:) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

SCOPe Domain Sequences for d1yhcb1:

Sequence; same for both SEQRES and ATOM records:

>d1yhcb1 d.14.1.7 (B:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei

Timeline for d1yhcb1:

• d1yhcb1 first appeared in SCOP 1.73
  
• d1yhcb1 appears in SCOPe 2.07