Lineage for d1yhca1 (1yhc A:2-127)

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. Family d.14.1.7: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC [89827] (2 proteins)
    duplication; there are two structural repeats of this fold; each repeat is elaborated with additional structures forming the active site
  6. Protein UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC [89828] (1 species)
  7. Species Aquifex aeolicus [TaxId:63363] [89829] (18 PDB entries)
    Uniprot O67648 3-270
  8. Domain d1yhca1: 1yhc A:2-127 [123168]
    automated match to d1p42a1
    complexed with cac, cl, gol, pam, so4, zn

Details for d1yhca1

PDB Entry: 1yhc (more details), 2.1 Å

PDB Description: Crystal structure of Aquifex aeolicus LpxC deacetylase complexed with cacodylate
PDB Compounds: (A:) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

SCOPe Domain Sequences for d1yhca1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yhca1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
glektvkeklsfegvgihtgeyskliihpekegtgirffkngvyiparhefvvhtnhstd
lgfkgqriktvehilsvlhlleitnvtievigneipildgsgwefyeairknilnqnrei

SCOPe Domain Coordinates for d1yhca1 are not available.

Timeline for d1yhca1:

View in 3D
Domains from same chain:
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d1yhca2
View in 3D
Domains from other chains:
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d1yhcb1, d1yhcb2