SCOPe 2.08: Domain d1pokb2: 1pok B:63-346

Lineage for d1pokb2 (1pok B:63-346)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.13: Isoaspartyl dipeptidase, catalytic domain [89489] (1 protein)

6. Protein Isoaspartyl dipeptidase, catalytic domain [89490] (1 species)

7. Species Escherichia coli [TaxId:562] [89491] (5 PDB entries)
   Uniprot P39377

8. Domain d1pokb2: 1pok B:63-346 [104210]
   Other proteins in same PDB: d1poka1, d1pokb1
   complexed with asn, so4, zn

Details for d1pokb2

PDB Entry: 1pok, 2.7 Å

PDB Description: crystal structure of isoaspartyl dipeptidase

PDB Compounds: (B:) Isoaspartyl dipeptidase

SCOPe Domain Sequences for d1pokb2:

Sequence, based on SEQRES records:

>d1pokb2 c.1.9.13 (B:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}
gfidqhvhliggggeagpttrtpevalsrlteagvtsvvgllgtdsisrhpesllaktra
lneegisawmltgayhvpsrtitgsvekdvaiidrvigvkcaisdhrsaapdvyhlanma
aesrvggllggkpgvtvfhmgdskkalqpiydllencdvpiskllpthvnrnvplfeqal
efarkggtiditssidepvapaegiaravqagiplarvtlssdgngsqpffddegnlthi
gvagfetlletvqvlvkdydfsisdalrpltssvagflnltgkg

Sequence, based on observed residues (ATOM records):

>d1pokb2 c.1.9.13 (B:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}
gfidqhvhliggggeagpttrtpevalsrlteagvtsvvgllgtdsisrhpesllaktra
lneegisawmltgayhvpsrtitgsvekdvaiidrvigvkcaisdhrsaapdvyhlanma
aesrvggllggkpgvtvfhmgdskkalqpiydllencdvpiskllpthvnrnvplfeqal
efarkggtiditssidepvapaegiaravqagiplarvtlssdgngsvagfetlletvqv
lvkdydfsisdalrpltssvagflnltgkg

Timeline for d1pokb2:

• d1pokb2 first appeared in SCOP 1.69
  
• d1pokb2 appears in SCOPe 2.07