PDB entry 4ww2

View 4ww2 on RCSB PDB site
Description: Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8, Beta Chain-TRBV7-8, Antigen-presenting glycoprotein CD1d, and Beta-2-microglobulin
Class: immune system
Keywords: Natural Killer T Cells, Immunity, IMMUNE SYSTEM
Deposited on 2014-11-10, released 2016-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TCR Alpha Chain-TRAV21-TRAJ8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4WW2 (0-End)
    Domains in SCOPe 2.08: d4ww2a1, d4ww2a2
  • Chain 'B':
    Compound: TCR Beta Chain-TRBV7-8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4WW2 (0-242)
    Domains in SCOPe 2.08: d4ww2b1, d4ww2b2
  • Chain 'C':
    Compound: Antigen-presenting glycoprotein CD1d
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1D
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ww2c1, d4ww2c2
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ww2f_
  • Heterogens: NAG, JLS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ww2A (A:)
mkqevtqipaalsvpegenlvlncsftdsaiynlqwfrqdpgkgltsllliqssqreqts
grlnasldkssgrstlyiaasqpgdsatylcagvntgfqklvfgtgtrllvspniqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records): (download) 
    >4ww2A (A:)
mkqevtqipaalsvpegenlvlncsftdsaiynlqwfrqdpgkgltsllliqssqreqts
grlnasldkssgrstlyiaasqpgdsatylcagvntgfqklvfgtgtrllvspniqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffps

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ww2B (B:)
mgagvsqsprykvakrgqdvalrcdpisghvslfwyqqalgqgpefltyfqneaqldksg
lpsdrffaerpegsvstlkiqrtqqedsavylcasssrdleqyfgpgtrltvtedlknvf
ppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ww2C (C:)
spgvpqrlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfs
dqqwetlqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafq
gkdilsfqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgks
elkkqvkpkawlsrgpspgpgrlllvchvsgfypkpvwvkwmrgeqeqqgtqpgdilpna
detwylratldvvageaaglscrvkhsslegqdivlywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4ww2C (C:)
vpqrlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfsdqq
wetlqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafqgkd
ilsfqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgkselk
kqvkpkawlsrgpspgpgrlllvchvsgfypkpvwvkwmrgeqeqqgtqpgdilpnadet
wylratldvvageaaglscrvkhsslegqdivlyw

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ww2F (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >4ww2F (F:)
qrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdws
fyllyyteftptekdeyacrvnhvtlsqpkivkwdr