PDB entry 3u9p

View 3u9p on RCSB PDB site
Description: Crystal Structure of Murine Siderocalin in Complex with an Fab Fragment
Class: immune system
Keywords: Beta Barrel, Transport Protein, IMMUNE SYSTEM
Deposited on 2011-10-19, released 2013-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Mus musculus [TaxId:10090]
    Gene: Lcn2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3u9pc_
  • Chain 'D':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Mus musculus [TaxId:10090]
    Gene: Lcn2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3u9pd_
  • Chain 'H':
    Compound: Monoclonal Fab Fragment Heavy Chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 3U9P (0-End)
    Domains in SCOPe 2.08: d3u9ph_
  • Chain 'K':
    Compound: Monoclonal Fab Fragment Heavy Chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 3U9P (0-215)
    Domains in SCOPe 2.08: d3u9pk_
  • Chain 'L':
    Compound: Monoclonal Fab Fragment Light Chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 3U9P (0-211)
    Domains in SCOPe 2.08: d3u9pl1, d3u9pl2
  • Chain 'M':
    Compound: Monoclonal Fab Fragment Light Chain
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 3U9P (0-End)
    Domains in SCOPe 2.08: d3u9pm1, d3u9pm2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3u9pC (C:)
gsqdstqnlipapslltvplqpdfrsdqfrgrwyvvglagnavqkktegsftmystiyel
qennsynvtsilvrdqdqgcrywirtfvpssragqftlgnmhrypqvqsynvqvattdyn
qfamvffrktsenkqyfkitlygrtkelspelkerftrfakslglkddniifsvptdqci
dn

    Sequence, based on observed residues (ATOM records): (download) 
    >3u9pC (C:)
lipapslltvplqpdfrsdqfrgrwyvvglagnavqkktegsftmystiyelqennsynv
tsilvrcrywirtfvpssragqftlgnmhrypqvqsynvqvattdynqfamvffrktsen
kqyfkitlygrtkelspelkerftrfakslglkddniifsvptdqcidn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3u9pD (D:)
gsqdstqnlipapslltvplqpdfrsdqfrgrwyvvglagnavqkktegsftmystiyel
qennsynvtsilvrdqdqgcrywirtfvpssragqftlgnmhrypqvqsynvqvattdyn
qfamvffrktsenkqyfkitlygrtkelspelkerftrfakslglkddniifsvptdqci
dn

    Sequence, based on observed residues (ATOM records): (download) 
    >3u9pD (D:)
lipapslltvplqpdfrsdqfrgrwyvvglagnavqkkgsftmystiyelqennsynvts
ilvcrywirtfvpssragqftlgnmhrypqvqsynvqvattdynqfamvffrktsenkqy
fkitlygrtkelspelkerftrfakslglkddniifsvptdqcidn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3u9pH (H:)
evklqesgpslvqpsqtlsltctvsgfsltsnsvhwvrqppgqglewmggiwgdgrtdyn
salksrlsisrdtsksqvflkmnslqtddtaiyfctrcrrdssyvvdawgqgasvtvssa
kttpklvyplapgcgdttsstvtlgclvkgyfpepvtvtwnsgalssdvhtfpavlqsgl
ytltssvtsstwpsqtvtcnvahpasstkvdkkler

    Sequence, based on observed residues (ATOM records): (download) 
    >3u9pH (H:)
evklqeslvqpsqtlsltctvsgfsltsnsvhwvrqppgqglewmggiwgdgrtdynsal
ksrlsisrdtsksqvflkmnstddtaiyfctrcrrdssyvvdawgqgasvtvssakttpk
lvyplapvtlgclvkgyfpepvtvtwnshtfpavlqsglytltssvtvtcnvahpasstk
vdkk

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3u9pK (K:)
evklqesgpslvqpsqtlsltctvsgfsltsnsvhwvrqppgqglewmggiwgdgrtdyn
salksrlsisrdtsksqvflkmnslqtddtaiyfctrcrrdssyvvdawgqgasvtvssa
kttpklvyplapgcgdttsstvtlgclvkgyfpepvtvtwnsgalssdvhtfpavlqsgl
ytltssvtsstwpsqtvtcnvahpasstkvdkkler

    Sequence, based on observed residues (ATOM records): (download) 
    >3u9pK (K:)
evklqesgpslvqpsqtlsltctvsgfsltsnsvhwvrqppgqglewmggiwgdgrtdyn
salksrlsisrdtsksqvflkmnslqtddtaiyfctrcrrdssyvvdawgqgasvtvssa
kttpklvyplapvtlgclvkgyfpepvtvtwnsgalvhtfpavlqsglytltssvtsstw
vtcnvahpasstkvdkkler

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3u9pL (L:)
dilmtqsplslsaslgdkvtitcqasqiiynyiawyqqkpgkaprllirytstlesgtps
rfsgsgsgrdysfsisnvesediasyyclqydnlpymfgagtklelkradaaptvsifpp
sseqlatggasvvcfvnnfyprdisvkwkidgterrdgvldsvtdqdskdstysmsstls
ltkvdyerhnlytcevvhktssspvvksfnrn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3u9pM (M:)
dilmtqsplslsaslgdkvtitcqasqiiynyiawyqqkpgkaprllirytstlesgtps
rfsgsgsgrdysfsisnvesediasyyclqydnlpymfgagtklelkradaaptvsifpp
sseqlatggasvvcfvnnfyprdisvkwkidgterrdgvldsvtdqdskdstysmsstls
ltkvdyerhnlytcevvhktssspvvksfnrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3u9pM (M:)
dilmtqsplslsaslgdkvtitcqasqiiynyiawyqqkpgkaprllirytstlesgtps
rfsgsgsgrdysfsisnvesediasyyclqydnlpymfgagtklelkradaaptvsifpp
sseqlatggasvvcfvnnfyprdisvkwkidgterrdgvldsvtdqdskdstysmsstls
ltkvdyerhnlytcevvhktssspvvksfnr