PDB entry 3s11

View 3s11 on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, strain 437-10
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein
Deposited on 2011-05-14, released 2011-12-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9EA62 (8-End)
      • expression tag (6-7)
    Domains in SCOPe 2.08: d3s11a1, d3s11a2
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3s11b_
  • Chain 'C':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9EA62 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.08: d3s11c1, d3s11c2
  • Chain 'D':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3s11d_
  • Chain 'E':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9EA62 (8-End)
      • expression tag (6-7)
    Domains in SCOPe 2.08: d3s11e1, d3s11e2
  • Chain 'F':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus [TaxId:11320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3s11f_
  • Heterogens: NAG, GOL, TAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3s11A (A:)
dlgsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplil
rdcsvagwllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfe
kiqiipksswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedl
lvlwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwti
lkpndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfh
nihpltigecpkyvksnrlvlatglrntpqr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11A (A:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrnt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3s11B (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11B (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3s11C (C:)
dlgsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplil
rdcsvagwllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfe
kiqiipksswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedl
lvlwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwti
lkpndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfh
nihpltigecpkyvksnrlvlatglrntpqr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11C (C:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfekiqiipk
sswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrnt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3s11D (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11D (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnree

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3s11E (E:)
dlgsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplil
rdcsvagwllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfe
kiqiipksswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedl
lvlwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwti
lkpndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfh
nihpltigecpkyvksnrlvlatglrntpqr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11E (E:)
pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdefinvpewsyivekaspandlcypgdfnnyeelkhllsrtnhfekiqiip
ksswsnhdassgvssacpyhgkssffrnvvwlikknsayptikrsynntnqedllvlwgi
hhpndaaeqtklyqnpttyisvgtstlnqrlvpeiatrpkvngqsgrmeffwtilkpnda
infesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplt
igecpkyvksnrlvlatglrnt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3s11F (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >3s11F (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreei