Lineage for Family d.20.1.1: UBC-related

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1898312Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 1898313Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 1898314Family d.20.1.1: UBC-related [54496] (7 proteins)

Proteins:

  1. 1898315Hypothetical protein Tgtwinscan_2721, E2 domain [143066] (1 species)
  2. 1898319Putative ubiquitin-conjugating enzyme, E2 domain [143070] (1 species)
  3. 1898322Ubiquitin conjugating enzyme, UBC [54497] (33 species)
    1. 1898323Species African clawed frog (Xenopus laevis) [TaxId:8355] [160080] (1 PDB entry)
    2. 1898325Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187672] (2 PDB entries)
    3. 1898332Species Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId:4932] [64241] (2 PDB entries)
    4. 1898335Species Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId:4932] [69685] (3 PDB entries)
      Uniprot P21734
    5. 1898340Species Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId:4932] [64239] (4 PDB entries)
    6. 1898346Species Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:4932] [54499] (1 PDB entry)
    7. 1898350Species Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId:4932] [54500] (1 PDB entry)
    8. 1898352Species Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId:4932] [54501] (1 PDB entry)
    9. 1898354Species Caenorhabditis elegans, E2 2 [TaxId:6239] [143060] (1 PDB entry)
      Uniprot P35129 1-147
    10. 1898356Species Clam (Spisula solidissima), E-2C [TaxId:6584] [54504] (1 PDB entry)
    11. 1898358Species Human (Homo sapiens), E2 D3 [TaxId:9606] [143054] (3 PDB entries)
      Uniprot P61077 1-147
    12. 1898362Species Human (Homo sapiens), E2 G1 [TaxId:9606] [143056] (1 PDB entry)
      Uniprot P62253 7-131
    13. 1898364Species Human (Homo sapiens), E2 H [TaxId:9606] [143055] (1 PDB entry)
      Uniprot P62256 4-155
    14. 1898367Species Human (Homo sapiens), E2 J2 [TaxId:9606] [143050] (1 PDB entry)
      Uniprot Q5T7L1 12-168
      ubc6 homologue
    15. 1898370Species Human (Homo sapiens), E2 L6 [TaxId:9606] [143052] (1 PDB entry)
      Uniprot O14933 2-151
    16. 1898372Species Human (Homo sapiens), E2 M [TaxId:9606] [143058] (3 PDB entries)
      Uniprot P61081 27-183
      the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
    17. 1898377Species Human (Homo sapiens), E2 S [TaxId:9606] [143048] (1 PDB entry)
      Uniprot Q16763 6-156
    18. 1898379Species Human (Homo sapiens), E2 T [TaxId:9606] [143057] (1 PDB entry)
      Uniprot Q9NPD8 1-154
      Hspc150
    19. 1898381Species Human (Homo sapiens), E2 U [TaxId:9606] [143053] (1 PDB entry)
      Uniprot Q5VVX9 1-148
    20. 1898383Species Human (Homo sapiens), E2 variant 1 [TaxId:9606] [143051] (6 PDB entries)
      Uniprot Q13404 80-221! Uniprot Q13404 82-220
    21. 1898390Species Human (Homo sapiens), mms2 [TaxId:9606] [64242] (6 PDB entries)
    22. 1898407Species Human (Homo sapiens), ubc13 [TaxId:9606] [64240] (5 PDB entries)
    23. 1898416Species Human (Homo sapiens), ubc2b [TaxId:9606] [102840] (4 PDB entries)
      E2-17 kDa
    24. 1898421Species Human (Homo sapiens), ubc9 [TaxId:9606] [54503] (22 PDB entries)
      identical sequence in many other species
    25. 1898449Species Human (Homo sapiens), ubch10 [TaxId:9606] [64243] (1 PDB entry)
    26. 1898452Species Human (Homo sapiens), ubch5b [TaxId:9606] [102841] (14 PDB entries)
      Uniprot P62837
      E2-17 kDa 2
    27. 1898468Species Human (Homo sapiens), ubch7 [TaxId:9606] [54502] (2 PDB entries)
    28. 1898471Species Human (Homo sapiens), ubch8 [TaxId:9606] [117850] (1 PDB entry)
      Uniprot Q96LR5 54-201
    29. 1898475Species Leishmania major [TaxId:5664] [143049] (1 PDB entry)
      Uniprot Q4Q5L3 9-166
      Ubiquitin carrier protein 4, putative
    30. 1898477Species Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId:6239] [89862] (1 PDB entry)
    31. 1898479Species Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:6239] [102842] (1 PDB entry)
    32. 1898483Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [54498] (1 PDB entry)
    33. 1898485Species Toxoplasma gondii [TaxId:5811] [143059] (1 PDB entry)
  4. 1898487Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain [143068] (1 species)
    this proteins contains the N-terminal RWD domain
  5. 1898491Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain [143063] (2 species)
    ubc1 homologue; also contains the C-terminal UBA domain
    1. 1898492Species Cow (Bos taurus) [TaxId:9913] [143065] (1 PDB entry)
      Uniprot P61085 1-154
    2. 1898494Species Human (Homo sapiens) [TaxId:9606] [143064] (6 PDB entries)
      Uniprot P61086 1-156
  6. 1898503Ubiquitin-protein ligase W (E2 W) [143061] (1 species)
    forms segment-swapped dimer
  7. 1898507automated matches [190124] (12 species)
    not a true protein
    1. 1898508Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (1 PDB entry)
    2. 1898511Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [197196] (3 PDB entries)
    3. 1898515Species Entamoeba (Entamoeba histolytica) [TaxId:5759] [193761] (1 PDB entry)
    4. 1898517Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)
    5. 1898519Species Human (Homo sapiens) [TaxId:9606] [186848] (39 PDB entries)
    6. 1898601Species Leishmania major [TaxId:5664] [188133] (1 PDB entry)
    7. 1898604Species Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)
    8. 1898607Species Nematode (Brugia malayi) [TaxId:6279] [226704] (1 PDB entry)
    9. 1898609Species Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)
    10. 1898611Species Plasmodium falciparum [TaxId:36329] [187963] (5 PDB entries)
    11. 1898623Species Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)
    12. 1898625Species Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)

More info for Family d.20.1.1: UBC-related

Timeline for Family d.20.1.1: UBC-related: