SCOPe 2.03: Protein: Naphthalene 1,2-dioxygenase alpha subunit, N-domain

Lineage for Protein: Naphthalene 1,2-dioxygenase alpha subunit, N-domain

Root: SCOPe 2.03
Class b: All beta proteins [48724] (174 folds)

Fold b.33: ISP domain [50021] (1 superfamily)
consists of two all-beta subdomains: conserved small domain has a rubredoxin-like fold; larger domain consists of 6 beta-stands packed in either sandwich of two 3-stranded sheets or closed barrel (n=6; S=8)

Superfamily b.33.1: ISP domain [50022] (4 families)
Family b.33.1.2: Ring hydroxylating alpha subunit ISP domain [50033] (6 proteins)
Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain [50034] (3 species)

Species:

Pseudomonas putida [TaxId:303] [50035] (16 PDB entries)
1. Domain for 1eg9:
  - Domain d1eg9a1: 1eg9 A:1-154 [24443]
    Other proteins in same PDB: d1eg9a2, d1eg9b_
    complexed with fe, fes, ind, so4
2. Domains for 1ndo:
  1. Domain d1ndoa1: 1ndo A:1-154 [24444]
    Other proteins in same PDB: d1ndoa2, d1ndob_, d1ndoc2, d1ndod_, d1ndoe2, d1ndof_
    complexed with fe, fes
  2. Domain d1ndoc1: 1ndo C:1-154 [24445]
    Other proteins in same PDB: d1ndoa2, d1ndob_, d1ndoc2, d1ndod_, d1ndoe2, d1ndof_
    complexed with fe, fes
  3. Domain d1ndoe1: 1ndo E:1-154 [24446]
    Other proteins in same PDB: d1ndoa2, d1ndob_, d1ndoc2, d1ndod_, d1ndoe2, d1ndof_
    complexed with fe, fes
3. Domain for 1o7g:
  - Domain d1o7ga1: 1o7g A:1-154 [81134]
    Other proteins in same PDB: d1o7ga2, d1o7gb_
    complexed with edo, fe, fes, npy, so4
4. Domain for 1o7h:
  - Domain d1o7ha1: 1o7h A:1-154 [81137]
    Other proteins in same PDB: d1o7ha2, d1o7hb_
    complexed with edo, fe, fes, so4
5. Domain for 1o7m:
  - Domain d1o7ma1: 1o7m A:1-154 [81159]
    Other proteins in same PDB: d1o7ma2, d1o7mb_
    complexed with edo, fe, fes, oxy, so4
6. Domain for 1o7n:
  - Domain d1o7na1: 1o7n A:1-154 [81162]
    Other proteins in same PDB: d1o7na2, d1o7nb_
    complexed with edo, fe, fes, ind, oxy, so4
7. Domain for 1o7p:
  - Domain d1o7pa1: 1o7p A:1-154 [81165]
    Other proteins in same PDB: d1o7pa2, d1o7pb_
    complexed with edo, fe, fes, ndh, so4
8. Domain for 1o7w:
  - Domain d1o7wa1: 1o7w A:1-154 [81168]
    Other proteins in same PDB: d1o7wa2, d1o7wb_
    complexed with edo, fe, fes, so4
9. Domain for 1uuv:
  - Domain d1uuva1: 1uuv A:1-154 [119699]
    Other proteins in same PDB: d1uuva2, d1uuvb_
    automated match to d1o7na1
    complexed with edo, fe, fes, ind, no, so4
10. Domain for 1uuw:
  - Domain d1uuwa1: 1uuw A:1-154 [119702]
    Other proteins in same PDB: d1uuwa2, d1uuwb_
    automated match to d1o7na1
    complexed with fe, fes, no, so4
11. Domain for 2hmj:
  - Domain d2hmja1: 2hmj A:1-154 [136585]
    Other proteins in same PDB: d2hmja2, d2hmjb_
    automatically matched to d1eg9a1
    complexed with edo, fe, fes, so4; mutant
12. Domain for 2hmk:
  - Domain d2hmka1: 2hmk A:1-154 [136588]
    Other proteins in same PDB: d2hmka2, d2hmkb_
    automated match to d1o7na1
    complexed with edo, fe, fes, pey, so4
13. Domain for 2hml:
  - Domain d2hmla1: 2hml A:1-154 [136591]
    Other proteins in same PDB: d2hmla2, d2hmlb_
    automatically matched to d1eg9a1
    complexed with edo, fe, fes, pey, so4; mutant
14. Domain for 2hmm:
  - Domain d2hmma1: 2hmm A:1-154 [136594]
    Other proteins in same PDB: d2hmma2, d2hmmb_
    automated match to d1o7na1
    complexed with an3, edo, fe, fes, so4
15. Domain for 2hmn:
  - Domain d2hmna1: 2hmn A:1-154 [136597]
    Other proteins in same PDB: d2hmna2, d2hmnb_
    automatically matched to d1eg9a1
    complexed with an3, edo, fe, fes, so4; mutant
16. Domain for 2hmo:
  - Domain d2hmoa1: 2hmo A:1-154 [136600]
    Other proteins in same PDB: d2hmoa2, d2hmob_
    automated match to d1o7na1
    complexed with 3nt, edo, fe, fes, so4
Pseudomonas sp. [TaxId:69011] [228594] (10 PDB entries)
1. Domain for 4hkv:
  - Domain d4hkva1: 4hkv A:1-154 [228595]
    Other proteins in same PDB: d4hkva2, d4hkvb_
    automated match to d1o7na1
    complexed with edo, fe, fes, so4, unu
2. Domain for 4hm0:
  - Domain d4hm0a1: 4hm0 A:1-154 [228626]
    Other proteins in same PDB: d4hm0a2, d4hm0b_
    automated match to d1o7na1
    complexed with edo, fe, fes, iac, so4
3. Domain for 4hm1:
  - Domain d4hm1a1: 4hm1 A:1-154 [228614]
    Other proteins in same PDB: d4hm1a2, d4hm1b_
    automated match to d1o7na1
    complexed with 1on, edo, fe, fes, so4
4. Domain for 4hm2:
  - Domain d4hm2a1: 4hm2 A:1-154 [228608]
    Other proteins in same PDB: d4hm2a2, d4hm2b_
    automated match to d1o7na1
    complexed with 16m, edo, fe, fes, so4
5. Domain for 4hm3:
  - Domain d4hm3a1: 4hm3 A:1-154 [228618]
    Other proteins in same PDB: d4hm3a2, d4hm3b_
    automated match to d1o7na1
    complexed with edo, fe, fes, pyl, so4
6. Domain for 4hm4:
  - Domain d4hm4a1: 4hm4 A:1-154 [228602]
    Other proteins in same PDB: d4hm4a2, d4hm4b_
    automated match to d1o7na1
    complexed with 16n, edo, fe, fes, so4
7. Domain for 4hm5:
  - Domain d4hm5a1: 4hm5 A:1-154 [228612]
    Other proteins in same PDB: d4hm5a2, d4hm5b_
    automated match to d1o7na1
    complexed with 16n, edo, fe, fes, so4
8. Domain for 4hm6:
  - Domain d4hm6a1: 4hm6 A:1-154 [228621]
    Other proteins in same PDB: d4hm6a2, d4hm6b_
    automated match to d1o7na1
    complexed with 16q, edo, fe, fes, so4
9. Domain for 4hm7:
  - Domain d4hm7a1: 4hm7 A:1-154 [228624]
    Other proteins in same PDB: d4hm7a2, d4hm7b_
    automated match to d1o7na1
    complexed with edo, fe, fes, so4, syn
10. Domain for 4hm8:
  - Domain d4hm8a1: 4hm8 A:1-154 [228604]
    Other proteins in same PDB: d4hm8a2, d4hm8b_
    automated match to d1o7na1
    complexed with 16r, edo, fe, fes, so4
Rhodococcus sp. ncimb12038 [TaxId:92694] [141177] (2 PDB entries)
Uniprot Q9X3R9 1-162
1. Domains for 2b1x:
  1. Domain d2b1xa1: 2b1x A:1-162 [127675]
    Other proteins in same PDB: d2b1xa2, d2b1xb1, d2b1xc2, d2b1xd_, d2b1xe2, d2b1xf_
    complexed with fe, fes, mpd
  2. Domain d2b1xc1: 2b1x C:1-162 [127678]
    Other proteins in same PDB: d2b1xa2, d2b1xb1, d2b1xc2, d2b1xd_, d2b1xe2, d2b1xf_
    automated match to d2b1xa1
    complexed with fe, fes, mpd
  3. Domain d2b1xe1: 2b1x E:1-162 [127681]
    Other proteins in same PDB: d2b1xa2, d2b1xb1, d2b1xc2, d2b1xd_, d2b1xe2, d2b1xf_
    automated match to d2b1xa1
    complexed with fe, fes, mpd
2. Domains for 2b24:
  1. Domain d2b24a1: 2b24 A:1-162 [127690]
    Other proteins in same PDB: d2b24a2, d2b24b1, d2b24c2, d2b24d1, d2b24e2, d2b24f1
    automatically matched to 2B1X A:1-162
    complexed with fe, fes, ind
  2. Domain d2b24c1: 2b24 C:1-162 [127693]
    Other proteins in same PDB: d2b24a2, d2b24b1, d2b24c2, d2b24d1, d2b24e2, d2b24f1
    automatically matched to 2B1X A:1-162
    complexed with fe, fes, ind
  3. Domain d2b24e1: 2b24 E:1-162 [127696]
    Other proteins in same PDB: d2b24a2, d2b24b1, d2b24c2, d2b24d1, d2b24e2, d2b24f1
    automatically matched to 2B1X A:1-162
    complexed with fe, fes, ind

More info for Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain

Timeline for Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain:

Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain first appeared (with stable ids) in SCOP 1.55, called Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain appears in SCOPe 2.02
Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain appears in SCOPe 2.04
Protein Naphthalene 1,2-dioxygenase alpha subunit, N-domain from b.33.1.2: Ring hydroxylating alpha subunit ISP domain appears in the current release, SCOPe 2.08