SCOP 1.75: Species: Rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOP 1.75
Class a: All alpha proteins [46456] (284 folds)
Fold a.118: alpha-alpha superhelix [48370] (24 superfamilies)
multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
Superfamily a.118.6: Protein prenylyltransferase [48439] (1 family)
Family a.118.6.1: Protein prenylyltransferase [48440] (2 proteins)
Protein Protein farnesyltransferase alpha-subunit [48441] (2 species)
Species Rat (Rattus norvegicus) [TaxId:10116] [48442] (29 PDB entries)
Uniprot Q04631 55-369

PDB entries in Species: Rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1d8d:
- Domain d1d8da_: 1d8d A: [19185]
  Other proteins in same PDB: d1d8db_
  complex with K-ras4b peptide substrate
Domain(s) for 1d8e:
- Domain d1d8ea_: 1d8e A: [19188]
  Other proteins in same PDB: d1d8eb_
  complex with k-ras4b peptide substrate and FPP analog
  complexed with ace, fii
Domain(s) for 1fpp:
- Domain d1fppa_: 1fpp A: [19189]
  Other proteins in same PDB: d1fppb_
  complexed with fpp, po4, zn
Domain(s) for 1ft1:
- Domain d1ft1a_: 1ft1 A: [19186]
  Other proteins in same PDB: d1ft1b_
  complexed with zn
Domain(s) for 1ft2:
- Domain d1ft2a_: 1ft2 A: [19190]
  Other proteins in same PDB: d1ft2b_
  complexed with fpp, zn
Domain(s) for 1jcr:
- Domain d1jcra_: 1jcr A: [66506]
  Other proteins in same PDB: d1jcrb_
  complexed with acy, fpp, zn
Domain(s) for 1jcs:
- Domain d1jcsa_: 1jcs A: [66508]
  Other proteins in same PDB: d1jcsb_
  complexed with acy, fii, zn
Domain(s) for 1kzo:
- Domain d1kzoa_: 1kzo A: [77638]
  Other proteins in same PDB: d1kzob_
  complex with k-ras4b peptide product and farnesyl diphosphate substrate bound simultaneously
  complexed with acy, far, fpp, zn
Domain(s) for 1kzp:
- Domain d1kzpa_: 1kzp A: [77640]
  Other proteins in same PDB: d1kzpb_
  complex with k-ras4b peptide product
  complexed with acy, far, zn
Domain(s) for 1n4p:
1. Domain d1n4pa_: 1n4p A: [91623]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
2. Domain d1n4pc_: 1n4p C: [91625]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
3. Domain d1n4pe_: 1n4p E: [91627]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
4. Domain d1n4pg_: 1n4p G: [91629]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
5. Domain d1n4pi_: 1n4p I: [91631]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
6. Domain d1n4pk_: 1n4p K: [91633]
  Other proteins in same PDB: d1n4pb_, d1n4pd_, d1n4pf_, d1n4ph_, d1n4pj_, d1n4pl_
  complexed with cl, grg, tth, zn
Domain(s) for 1n4q:
1. Domain d1n4qa_: 1n4q A: [91635]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
2. Domain d1n4qc_: 1n4q C: [91637]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
3. Domain d1n4qe_: 1n4q E: [91639]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
4. Domain d1n4qg_: 1n4q G: [91641]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
5. Domain d1n4qi_: 1n4q I: [91643]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
6. Domain d1n4qk_: 1n4q K: [91645]
  Other proteins in same PDB: d1n4qb_, d1n4qd_, d1n4qf_, d1n4qh_, d1n4qj_, d1n4ql_
  complexed with cl, mgm, tth, zn
Domain(s) for 1n4r:
1. Domain d1n4ra_: 1n4r A: [91647]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
2. Domain d1n4rc_: 1n4r C: [91649]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
3. Domain d1n4re_: 1n4r E: [91651]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
4. Domain d1n4rg_: 1n4r G: [91653]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
5. Domain d1n4ri_: 1n4r I: [91655]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
6. Domain d1n4rk_: 1n4r K: [91657]
  Other proteins in same PDB: d1n4rb_, d1n4rd_, d1n4rf_, d1n4rh_, d1n4rj_, d1n4rl_
  complexed with cl, mes, so4, tth, zn
Domain(s) for 1n4s:
1. Domain d1n4sa_: 1n4s A: [91659]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
2. Domain d1n4sc_: 1n4s C: [91661]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
3. Domain d1n4se_: 1n4s E: [91663]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
4. Domain d1n4sg_: 1n4s G: [91665]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
5. Domain d1n4si_: 1n4s I: [91667]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
6. Domain d1n4sk_: 1n4s K: [91669]
  Other proteins in same PDB: d1n4sb_, d1n4sd_, d1n4sf_, d1n4sh_, d1n4sj_, d1n4sl_
  complexed with cl, grg, tth, zn
Domain(s) for 1n94:
- Domain d1n94a_: 1n94 A: [80331]
  Other proteins in same PDB: d1n94b_
  complexed with hfp, tin, zn
Domain(s) for 1n95:
- Domain d1n95a_: 1n95 A: [80333]
  Other proteins in same PDB: d1n95b_
  complexed with fth, hfp, zn
Domain(s) for 1n9a:
- Domain d1n9aa_: 1n9a A: [80338]
  Other proteins in same PDB: d1n9ab_
  complexed with fti, hfp, zn
Domain(s) for 1ni1:
- Domain d1ni1a_: 1ni1 A: [91888]
  Other proteins in same PDB: d1ni1b_
  complexed with 2c5, hfp, zn
Domain(s) for 1nl4:
- Domain d1nl4a_: 1nl4 A: [80617]
  Other proteins in same PDB: d1nl4b_
  complexed with ftl, hfp, zn; mutant
Domain(s) for 1o1r:
- Domain d1o1ra_: 1o1r A: [86547]
  Other proteins in same PDB: d1o1rb_
  complexed with grg, zn
Domain(s) for 1o1s:
- Domain d1o1sa_: 1o1s A: [86549]
  Other proteins in same PDB: d1o1sb_
  complexed with 1nh, zn
Domain(s) for 1o1t:
- Domain d1o1ta_: 1o1t A: [86551]
  Other proteins in same PDB: d1o1tb_
  complexed with 2nh, mg, zn
Domain(s) for 1o5m:
- Domain d1o5ma_: 1o5m A: [92507]
  Other proteins in same PDB: d1o5mb_
  complexed with 336, fpp, zn
Domain(s) for 1qbq:
- Domain d1qbqa_: 1qbq A: [19187]
  Other proteins in same PDB: d1qbqb_
  complexed with ace, act, hfp, zn
Domain(s) for 1s64:
1. Domain d1s64a_: 1s64 A: [105287]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
2. Domain d1s64c_: 1s64 C: [105289]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
3. Domain d1s64e_: 1s64 E: [105291]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
4. Domain d1s64g_: 1s64 G: [105293]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
5. Domain d1s64i_: 1s64 I: [105295]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
6. Domain d1s64k_: 1s64 K: [105297]
  Other proteins in same PDB: d1s64b_, d1s64d_, d1s64f_, d1s64h_, d1s64j_, d1s64l_
  complexed with 778, cl, mes, so4, zn
Domain(s) for 1sa5:
- Domain d1sa5a_: 1sa5 A: [105404]
  Other proteins in same PDB: d1sa5b_
  complexed with acy, bmv, fpp, zn
Domain(s) for 1x81:
- Domain d1x81a_: 1x81 A: [114953]
  Other proteins in same PDB: d1x81b_
  complexed with jan, zn
Domain(s) for 2bed:
- Domain d2beda1: 2bed A:54-366 [128375]
  Other proteins in same PDB: d2bedb1
  automatically matched to d1o1ra_
  complexed with 736, fpp, zn
Domain(s) for 2r2l:
- Domain d2r2la1: 2r2l A:54-368 [151535]
  Other proteins in same PDB: d2r2lb1
  automatically matched to d1o1ra_
  complexed with fpp, pb9, zn
Domain(s) for 3dpy:
- Domain d3dpya1: 3dpy A:55-377 [157825]
  Other proteins in same PDB: d3dpyb1
  automatically matched to d1d8da_
  complexed with acy, fpp, zn

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit:

Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit first appeared (with stable ids) in SCOP 1.55
Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit appears in SCOP 1.73
Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit is called Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit in SCOPe 2.01
Species Rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit appears in the current release, SCOPe 2.08, called Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.118.6.1 Protein farnesyltransferase alpha-subunit