SCOP 1.75: Species: Rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOP 1.75
Class a: All alpha proteins [46456] (284 folds)

Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (4 families)
Family a.102.4.3: Protein prenyltransferases [48246] (2 proteins)
Protein Protein farnesyltransferase, beta-subunit [48247] (2 species)
Species Rat (Rattus norvegicus) [TaxId:10116] [48248] (29 PDB entries)
Uniprot Q02293 22-418 P53610

PDB entries in Species: Rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1d8d:
- Domain d1d8db_: 1d8d B: [18866]
  Other proteins in same PDB: d1d8da_
  complex with K-ras4b peptide substrate
Domain(s) for 1d8e:
- Domain d1d8eb_: 1d8e B: [18869]
  Other proteins in same PDB: d1d8ea_
  complex with k-ras4b peptide substrate and FPP analog
  complexed with ace, fii
Domain(s) for 1fpp:
- Domain d1fppb_: 1fpp B: [18870]
  Other proteins in same PDB: d1fppa_
  complexed with fpp, po4, zn
Domain(s) for 1ft1:
- Domain d1ft1b_: 1ft1 B: [18867]
  Other proteins in same PDB: d1ft1a_
  complexed with zn
Domain(s) for 1ft2:
- Domain d1ft2b_: 1ft2 B: [18871]
  Other proteins in same PDB: d1ft2a_
  complexed with fpp, zn
Domain(s) for 1jcr:
- Domain d1jcrb_: 1jcr B: [66507]
  Other proteins in same PDB: d1jcra_
  complexed with acy, fpp, zn
Domain(s) for 1jcs:
- Domain d1jcsb_: 1jcs B: [66509]
  Other proteins in same PDB: d1jcsa_
  complexed with acy, fii, zn
Domain(s) for 1kzo:
- Domain d1kzob_: 1kzo B: [77639]
  Other proteins in same PDB: d1kzoa_
  complex with k-ras4b peptide product and farnesyl diphosphate substrate bound simultaneously
  complexed with acy, far, fpp, zn
Domain(s) for 1kzp:
- Domain d1kzpb_: 1kzp B: [77641]
  Other proteins in same PDB: d1kzpa_
  complex with k-ras4b peptide product
  complexed with acy, far, zn
Domain(s) for 1n4p:
1. Domain d1n4pb_: 1n4p B: [91624]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
2. Domain d1n4pd_: 1n4p D: [91626]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
3. Domain d1n4pf_: 1n4p F: [91628]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
4. Domain d1n4ph_: 1n4p H: [91630]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
5. Domain d1n4pj_: 1n4p J: [91632]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
6. Domain d1n4pl_: 1n4p L: [91634]
  Other proteins in same PDB: d1n4pa_, d1n4pc_, d1n4pe_, d1n4pg_, d1n4pi_, d1n4pk_
  complexed with cl, grg, tth, zn
Domain(s) for 1n4q:
1. Domain d1n4qb_: 1n4q B: [91636]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
2. Domain d1n4qd_: 1n4q D: [91638]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
3. Domain d1n4qf_: 1n4q F: [91640]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
4. Domain d1n4qh_: 1n4q H: [91642]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
5. Domain d1n4qj_: 1n4q J: [91644]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
6. Domain d1n4ql_: 1n4q L: [91646]
  Other proteins in same PDB: d1n4qa_, d1n4qc_, d1n4qe_, d1n4qg_, d1n4qi_, d1n4qk_
  complexed with cl, mgm, tth, zn
Domain(s) for 1n4r:
1. Domain d1n4rb_: 1n4r B: [91648]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
2. Domain d1n4rd_: 1n4r D: [91650]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
3. Domain d1n4rf_: 1n4r F: [91652]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
4. Domain d1n4rh_: 1n4r H: [91654]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
5. Domain d1n4rj_: 1n4r J: [91656]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
6. Domain d1n4rl_: 1n4r L: [91658]
  Other proteins in same PDB: d1n4ra_, d1n4rc_, d1n4re_, d1n4rg_, d1n4ri_, d1n4rk_
  complexed with cl, mes, so4, tth, zn
Domain(s) for 1n4s:
1. Domain d1n4sb_: 1n4s B: [91660]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
2. Domain d1n4sd_: 1n4s D: [91662]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
3. Domain d1n4sf_: 1n4s F: [91664]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
4. Domain d1n4sh_: 1n4s H: [91666]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
5. Domain d1n4sj_: 1n4s J: [91668]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
6. Domain d1n4sl_: 1n4s L: [91670]
  Other proteins in same PDB: d1n4sa_, d1n4sc_, d1n4se_, d1n4sg_, d1n4si_, d1n4sk_
  complexed with cl, grg, tth, zn
Domain(s) for 1n94:
- Domain d1n94b_: 1n94 B: [80332]
  Other proteins in same PDB: d1n94a_
  complexed with hfp, tin, zn
Domain(s) for 1n95:
- Domain d1n95b_: 1n95 B: [80334]
  Other proteins in same PDB: d1n95a_
  complexed with fth, hfp, zn
Domain(s) for 1n9a:
- Domain d1n9ab_: 1n9a B: [80339]
  Other proteins in same PDB: d1n9aa_
  complexed with fti, hfp, zn
Domain(s) for 1ni1:
- Domain d1ni1b_: 1ni1 B: [91889]
  Other proteins in same PDB: d1ni1a_
  complexed with 2c5, hfp, zn
Domain(s) for 1nl4:
- Domain d1nl4b_: 1nl4 B: [80618]
  Other proteins in same PDB: d1nl4a_
  complexed with ftl, hfp, zn; mutant
Domain(s) for 1o1r:
- Domain d1o1rb_: 1o1r B: [86548]
  Other proteins in same PDB: d1o1ra_
  complexed with grg, zn
Domain(s) for 1o1s:
- Domain d1o1sb_: 1o1s B: [86550]
  Other proteins in same PDB: d1o1sa_
  complexed with 1nh, zn
Domain(s) for 1o1t:
- Domain d1o1tb_: 1o1t B: [86552]
  Other proteins in same PDB: d1o1ta_
  complexed with 2nh, mg, zn
Domain(s) for 1o5m:
- Domain d1o5mb_: 1o5m B: [92508]
  Other proteins in same PDB: d1o5ma_
  complexed with 336, fpp, zn
Domain(s) for 1qbq:
- Domain d1qbqb_: 1qbq B: [18868]
  Other proteins in same PDB: d1qbqa_
  complexed with ace, act, hfp, zn
Domain(s) for 1s64:
1. Domain d1s64b_: 1s64 B: [105288]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
2. Domain d1s64d_: 1s64 D: [105290]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
3. Domain d1s64f_: 1s64 F: [105292]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
4. Domain d1s64h_: 1s64 H: [105294]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
5. Domain d1s64j_: 1s64 J: [105296]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
6. Domain d1s64l_: 1s64 L: [105298]
  Other proteins in same PDB: d1s64a_, d1s64c_, d1s64e_, d1s64g_, d1s64i_, d1s64k_
  complexed with 778, cl, mes, so4, zn
Domain(s) for 1sa5:
- Domain d1sa5b_: 1sa5 B: [105405]
  Other proteins in same PDB: d1sa5a_
  complexed with acy, bmv, fpp, zn
Domain(s) for 1x81:
- Domain d1x81b_: 1x81 B: [114954]
  Other proteins in same PDB: d1x81a_
  complexed with jan, zn
Domain(s) for 2bed:
- Domain d2bedb1: 2bed B:23-423 [128376]
  Other proteins in same PDB: d2beda1
  automatically matched to d1ft1b_
  complexed with 736, fpp, zn
Domain(s) for 2r2l:
- Domain d2r2lb1: 2r2l B:23-423 [151536]
  Other proteins in same PDB: d2r2la1
  automatically matched to d1ft1b_
  complexed with fpp, pb9, zn
Domain(s) for 3dpy:
- Domain d3dpyb1: 3dpy B:22-423 [157826]
  Other proteins in same PDB: d3dpya1
  automatically matched to d1ft1b_
  complexed with acy, fpp, zn

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit:

Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit first appeared (with stable ids) in SCOP 1.55
Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit appears in SCOP 1.73
Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit is called Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit in SCOPe 2.01
Species Rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit appears in the current release, SCOPe 2.08, called Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.102.4.3 Protein farnesyltransferase, beta-subunit