SCOPe 2.08: Domain d7ldjc1: 7ldj C:331-527

Lineage for d7ldjc1 (7ldj C:331-527)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (5 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)

8. Domain d7ldjc1: 7ldj C:331-527 [403479]
   Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2
   automated match to d2dd8s1
   complexed with man, nag, pg4

Details for d7ldjc1

PDB Entry: 7ldj, 2.36 Å

PDB Description: sars-cov-2 receptor binding domain in complex with wnb-2

PDB Compounds: (C:) Spike glycoprotein

SCOPe Domain Sequences for d7ldjc1:

Sequence, based on SEQRES records:

>d7ldjc1 d.318.1.1 (C:331-527) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndl
cftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnyn
ylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrv
vvlsfellhapatvcgp

Sequence, based on observed residues (ATOM records):

>d7ldjc1 d.318.1.1 (C:331-527) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndl
cftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnyn
ylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrv
vvlsfelgp

Timeline for d7ldjc1:

• d7ldjc1 first appeared in SCOPe 2.07