Lineage for Species: Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
    part of PfamB PB000266
  6. Protein Spike protein S1 [143589] (5 species)
  7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (96 PDB entries)

PDB entries in Species: Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]:

  1. Domain(s) for 6lzg:
  2. Domain(s) for 6m0j:
  3. Domain(s) for 6m17:
    1. Domain d6m17e_: 6m17 E: [383012]
      automated match to d2dd8s1
      complexed with leu, nag, zn
    2. Domain d6m17f_: 6m17 F: [383190]
      automated match to d2dd8s1
      complexed with leu, nag, zn
  4. Domain(s) for 6w41:
  5. Domain(s) for 6xc2:
    1. Domain d6xc2a_: 6xc2 A: [389144]
      Other proteins in same PDB: d6xc2h_, d6xc2l1, d6xc2l2, d6xc2x_, d6xc2y1, d6xc2y2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d6xc2z_: 6xc2 Z: [389172]
      Other proteins in same PDB: d6xc2h_, d6xc2l1, d6xc2l2, d6xc2x_, d6xc2y1, d6xc2y2
      automated match to d2dd8s1
      complexed with nag
  6. Domain(s) for 6xc3:
  7. Domain(s) for 6xc4:
    1. Domain d6xc4a_: 6xc4 A: [389194]
      Other proteins in same PDB: d6xc4h_, d6xc4l1, d6xc4l2, d6xc4x_, d6xc4y1, d6xc4y2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d6xc4z_: 6xc4 Z: [389062]
      Other proteins in same PDB: d6xc4h_, d6xc4l1, d6xc4l2, d6xc4x_, d6xc4y1, d6xc4y2
      automated match to d2dd8s1
      complexed with nag
  8. Domain(s) for 6xc7:
  9. Domain(s) for 6xe1:
  10. Domain(s) for 6xkp:
    1. Domain d6xkpa_: 6xkp A: [393319]
      Other proteins in same PDB: d6xkph_, d6xkpl1, d6xkpl2, d6xkpm_, d6xkpn1, d6xkpn2
      automated match to d2dd8s1
      complexed with nag, so4
    2. Domain d6xkpb_: 6xkp B: [393356]
      Other proteins in same PDB: d6xkph_, d6xkpl1, d6xkpl2, d6xkpm_, d6xkpn1, d6xkpn2
      automated match to d2dd8s1
      complexed with nag, so4
  11. Domain(s) for 6xkq:
  12. Domain(s) for 6yla:
    1. Domain d6ylaa_: 6yla A: [383947]
      Other proteins in same PDB: d6ylab_, d6ylac1, d6ylac2, d6ylae2, d6ylah_, d6ylal1, d6ylal2
      automated match to d2dd8s1
      complexed with 1pe, dms, mli, nag, pg0
    2. Domain d6ylae1: 6yla E:330-529 [383862]
      Other proteins in same PDB: d6ylab_, d6ylac1, d6ylac2, d6ylae2, d6ylah_, d6ylal1, d6ylal2
      automated match to d2dd8s1
      complexed with 1pe, dms, mli, nag, pg0
  13. Domain(s) for 6yz5:
  14. Domain(s) for 6z2m:
    1. Domain d6z2ma_: 6z2m A: [387041]
      Other proteins in same PDB: d6z2mb_, d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2mh_, d6z2ml1, d6z2ml2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d6z2me_: 6z2m E: [387089]
      Other proteins in same PDB: d6z2mb_, d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2mh_, d6z2ml1, d6z2ml2
      automated match to d2dd8s1
      complexed with nag
  15. Domain(s) for 6zcz:
  16. Domain(s) for 7b3o:
  17. Domain(s) for 7beh:
  18. Domain(s) for 7bei:
  19. Domain(s) for 7bej:
  20. Domain(s) for 7bek:
  21. Domain(s) for 7bel:
    1. Domain d7belr_: 7bel R: [398444]
      Other proteins in same PDB: d7bela_, d7belb1, d7belb2, d7belc_, d7beld1, d7beld2, d7bele_, d7belf1, d7belh_, d7bell1
      automated match to d2dd8s1
      complexed with act, bma, gol, man, nag
    2. Domain d7belx_: 7bel X: [398475]
      Other proteins in same PDB: d7bela_, d7belb1, d7belb2, d7belc_, d7beld1, d7beld2, d7bele_, d7belf1, d7belh_, d7bell1
      automated match to d2dd8s1
      complexed with act, bma, gol, man, nag
  22. Domain(s) for 7bem:
  23. Domain(s) for 7ben:
    1. Domain d7benc_: 7ben C: [398455]
      Other proteins in same PDB: d7bena_, d7benb1, d7benb2, d7bend_, d7benf1, d7benf2, d7beng_, d7benh_, d7beni1, d7beni2, d7benl1, d7benl2
      automated match to d2dd8s1
      complexed with br, fuc, gol, imd, iod, nag, peg, pg6
    2. Domain d7bene_: 7ben E: [398705]
      Other proteins in same PDB: d7bena_, d7benb1, d7benb2, d7bend_, d7benf1, d7benf2, d7beng_, d7benh_, d7beni1, d7beni2, d7benl1, d7benl2
      automated match to d2dd8s1
      complexed with br, fuc, gol, imd, iod, nag, peg, pg6
  24. Domain(s) for 7beo:
    1. Domain d7beor_: 7beo R: [398398]
      Other proteins in same PDB: d7beoa_, d7beob1, d7beob2, d7beoc_, d7beod1, d7beod2, d7beoe_, d7beof1, d7beof2, d7beoh_, d7beol1, d7beol2
      automated match to d2dd8s1
      complexed with act, cl, fuc, gol, nag
    2. Domain d7beox_: 7beo X: [398411]
      Other proteins in same PDB: d7beoa_, d7beob1, d7beob2, d7beoc_, d7beod1, d7beod2, d7beoe_, d7beof1, d7beof2, d7beoh_, d7beol1, d7beol2
      automated match to d2dd8s1
      complexed with act, cl, fuc, gol, nag
  25. Domain(s) for 7bep:
    1. Domain d7bepc1: 7bep C:333-528 [398601]
      Other proteins in same PDB: d7bepa_, d7bepb1, d7bepc2, d7bepd_, d7bepe2, d7bepf1, d7bepi1, d7bepi2, d7bepl1, d7bepl2
      automated match to d2dd8s1
      complexed with cl, glu, gly, gol, imd, peg, pg4, pge
    2. Domain d7bepe1: 7bep E:333-528 [398424]
      Other proteins in same PDB: d7bepa_, d7bepb1, d7bepc2, d7bepd_, d7bepe2, d7bepf1, d7bepi1, d7bepi2, d7bepl1, d7bepl2
      automated match to d2dd8s1
      complexed with cl, glu, gly, gol, imd, peg, pg4, pge
  26. Domain(s) for 7bh9:
  27. Domain(s) for 7bwj:
  28. Domain(s) for 7bz5:
  29. Domain(s) for 7c01:
    1. Domain d7c01a_: 7c01 A: [386164]
      Other proteins in same PDB: d7c01c_, d7c01d1, d7c01d2, d7c01h_, d7c01l1, d7c01l2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7c01b_: 7c01 B: [386096]
      Other proteins in same PDB: d7c01c_, d7c01d1, d7c01d2, d7c01h_, d7c01l1, d7c01l2
      automated match to d2dd8s1
      complexed with nag
  30. Domain(s) for 7c8d:
  31. Domain(s) for 7c8j:
  32. Domain(s) for 7cdi:
  33. Domain(s) for 7ch4:
  34. Domain(s) for 7ch5:
  35. Domain(s) for 7chb:
  36. Domain(s) for 7chc:
  37. Domain(s) for 7chf:
  38. Domain(s) for 7cho:
    1. Domain d7choa_: 7cho A: [404874]
      Other proteins in same PDB: d7chob_, d7choc1, d7choc2, d7choh_, d7chol1, d7chol2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7choe_: 7cho E: [404777]
      Other proteins in same PDB: d7chob_, d7choc1, d7choc2, d7choh_, d7chol1, d7chol2
      automated match to d2dd8s1
      complexed with nag
  39. Domain(s) for 7chp:
  40. Domain(s) for 7chs:
  41. Domain(s) for 7cjf:
  42. Domain(s) for 7cm4:
  43. Domain(s) for 7deo:
    1. Domain d7deob1: 7deo B:334-530 [401970]
      Other proteins in same PDB: d7deoa1, d7deoa2, d7deob2, d7deoc1, d7deoc2
      automated match to d2dd8s1
      complexed with ca, nag
    2. Domain d7deod_: 7deo D: [401967]
      Other proteins in same PDB: d7deoa1, d7deoa2, d7deob2, d7deoc1, d7deoc2
      automated match to d2dd8s1
      complexed with ca, nag
  44. Domain(s) for 7det:
    1. Domain d7deta_: 7det A: [401984]
      Other proteins in same PDB: d7detb1, d7detb2, d7detd1, d7detd2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7detc_: 7det C: [401998]
      Other proteins in same PDB: d7detb1, d7detb2, d7detd1, d7detd2
      automated match to d2dd8s1
      complexed with nag
  45. Domain(s) for 7deu:
  46. Domain(s) for 7djz:
  47. Domain(s) for 7e3j:
  48. Domain(s) for 7e7y:
    1. Domain d7e7ye_: 7e7y E: [405280]
      Other proteins in same PDB: d7e7ya_, d7e7yb1, d7e7yb2, d7e7yc_, d7e7yd1, d7e7yd2
      automated match to d2dd8s1
    2. Domain d7e7yr_: 7e7y R: [405285]
      Other proteins in same PDB: d7e7ya_, d7e7yb1, d7e7yb2, d7e7yc_, d7e7yd1, d7e7yd2
      automated match to d2dd8s1
  49. Domain(s) for 7e86:
  50. Domain(s) for 7e88:
    1. Domain d7e88c_: 7e88 C: [405234]
      Other proteins in same PDB: d7e88a_, d7e88b1, d7e88b2, d7e88d_, d7e88e1, d7e88e2, d7e88g_, d7e88h1, d7e88h2, d7e88j_, d7e88k1, d7e88k2
      automated match to d2dd8s1
    2. Domain d7e88f_: 7e88 F: [405174]
      Other proteins in same PDB: d7e88a_, d7e88b1, d7e88b2, d7e88d_, d7e88e1, d7e88e2, d7e88g_, d7e88h1, d7e88h2, d7e88j_, d7e88k1, d7e88k2
      automated match to d2dd8s1
    3. Domain d7e88i_: 7e88 I: [405196]
      Other proteins in same PDB: d7e88a_, d7e88b1, d7e88b2, d7e88d_, d7e88e1, d7e88e2, d7e88g_, d7e88h1, d7e88h2, d7e88j_, d7e88k1, d7e88k2
      automated match to d2dd8s1
    4. Domain d7e88l_: 7e88 L: [405272]
      Other proteins in same PDB: d7e88a_, d7e88b1, d7e88b2, d7e88d_, d7e88e1, d7e88e2, d7e88g_, d7e88h1, d7e88h2, d7e88j_, d7e88k1, d7e88k2
      automated match to d2dd8s1
  51. Domain(s) for 7e8f:
  52. Domain(s) for 7e8m:
  53. Domain(s) for 7eam:
    1. Domain d7eama_: 7eam A: [402007]
      Other proteins in same PDB: d7eamc_, d7eamd1, d7eamd2, d7eamh_, d7eaml1, d7eaml2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7eamb_: 7eam B: [401975]
      Other proteins in same PDB: d7eamc_, d7eamd1, d7eamd2, d7eamh_, d7eaml1, d7eaml2
      automated match to d2dd8s1
      complexed with nag
  54. Domain(s) for 7ean:
  55. Domain(s) for 7jmo:
  56. Domain(s) for 7jmp:
  57. Domain(s) for 7jmw:
  58. Domain(s) for 7jx3:
  59. Domain(s) for 7k9z:
  60. Domain(s) for 7kfv:
    1. Domain d7kfva_: 7kfv A: [394893]
      Other proteins in same PDB: d7kfvc_, d7kfvd1, d7kfvd2, d7kfvf_, d7kfvg1, d7kfvg2, d7kfvh_, d7kfvl1, d7kfvl2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7kfvb_: 7kfv B: [394916]
      Other proteins in same PDB: d7kfvc_, d7kfvd1, d7kfvd2, d7kfvf_, d7kfvg1, d7kfvg2, d7kfvh_, d7kfvl1, d7kfvl2
      automated match to d2dd8s1
      complexed with nag
    3. Domain d7kfve_: 7kfv E: [395010]
      Other proteins in same PDB: d7kfvc_, d7kfvd1, d7kfvd2, d7kfvf_, d7kfvg1, d7kfvg2, d7kfvh_, d7kfvl1, d7kfvl2
      automated match to d2dd8s1
      complexed with nag
  61. Domain(s) for 7kfw:
    1. Domain d7kfwa_: 7kfw A: [394965]
      Other proteins in same PDB: d7kfwc_, d7kfwd1, d7kfwd2, d7kfwf_, d7kfwg1, d7kfwg2, d7kfwh_, d7kfwl1, d7kfwl2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7kfwb_: 7kfw B: [394943]
      Other proteins in same PDB: d7kfwc_, d7kfwd1, d7kfwd2, d7kfwf_, d7kfwg1, d7kfwg2, d7kfwh_, d7kfwl1, d7kfwl2
      automated match to d2dd8s1
      complexed with nag
    3. Domain d7kfwe_: 7kfw E: [395030]
      Other proteins in same PDB: d7kfwc_, d7kfwd1, d7kfwd2, d7kfwf_, d7kfwg1, d7kfwg2, d7kfwh_, d7kfwl1, d7kfwl2
      automated match to d2dd8s1
      complexed with nag
  62. Domain(s) for 7kfx:
  63. Domain(s) for 7kfy:
  64. Domain(s) for 7klh:
    1. Domain d7klha_: 7klh A: [399296]
      Other proteins in same PDB: d7klhh_, d7klhi_, d7klhl1, d7klhl2, d7klhm1, d7klhm2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7klhb_: 7klh B: [399280]
      Other proteins in same PDB: d7klhh_, d7klhi_, d7klhl1, d7klhl2, d7klhm1, d7klhm2
      automated match to d2dd8s1
      complexed with nag
  65. Domain(s) for 7kmg:
    1. Domain d7kmgc_: 7kmg C: [399333]
      Other proteins in same PDB: d7kmga1, d7kmga2, d7kmgb1, d7kmgb2, d7kmgd1, d7kmgd2, d7kmge1, d7kmge2
      automated match to d2dd8s1
      complexed with gol
    2. Domain d7kmgf_: 7kmg F: [399287]
      Other proteins in same PDB: d7kmga1, d7kmga2, d7kmgb1, d7kmgb2, d7kmgd1, d7kmgd2, d7kmge1, d7kmge2
      automated match to d2dd8s1
      complexed with gol
  66. Domain(s) for 7kmh:
  67. Domain(s) for 7kmi:
  68. Domain(s) for 7kn5:
    1. Domain d7kn5a_: 7kn5 A: [399310]
      Other proteins in same PDB: d7kn5c_, d7kn5d_, d7kn5e_, d7kn5f_
      automated match to d2dd8s1
      complexed with edo, nag
    2. Domain d7kn5b_: 7kn5 B: [399320]
      Other proteins in same PDB: d7kn5c_, d7kn5d_, d7kn5e_, d7kn5f_
      automated match to d2dd8s1
      complexed with edo, nag
  69. Domain(s) for 7kn6:
  70. Domain(s) for 7kn7:
  71. Domain(s) for 7kzb:
  72. Domain(s) for 7l0n:
    1. Domain d7l0nr_: 7l0n R: [399411]
      Other proteins in same PDB: d7l0nb1, d7l0nb2, d7l0nd1, d7l0nd2, d7l0ne_, d7l0nf_, d7l0nh_, d7l0nl1, d7l0nl2, d7l0nm_, d7l0nn1, d7l0nn2
      automated match to d2dd8s1
      complexed with cl, na, nag, pg4, pg5, pge, so4, zn
    2. Domain d7l0ns_: 7l0n S: [399434]
      Other proteins in same PDB: d7l0nb1, d7l0nb2, d7l0nd1, d7l0nd2, d7l0ne_, d7l0nf_, d7l0nh_, d7l0nl1, d7l0nl2, d7l0nm_, d7l0nn1, d7l0nn2
      automated match to d2dd8s1
      complexed with cl, na, nag, pg4, pg5, pge, so4, zn
  73. Domain(s) for 7l5b:
  74. Domain(s) for 7ldj:
    1. Domain d7ldja1: 7ldj A:334-527 [403446]
      Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2
      automated match to d2dd8s1
      complexed with man, nag, pg4
    2. Domain d7ldjb1: 7ldj B:331-527 [403470]
      Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2
      automated match to d2dd8s1
      complexed with man, nag, pg4
    3. Domain d7ldjc1: 7ldj C:331-527 [403479]
      Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2
      automated match to d2dd8s1
      complexed with man, nag, pg4
    4. Domain d7ldjd_: 7ldj D: [403484]
      Other proteins in same PDB: d7ldja2, d7ldjb2, d7ldjc2, d7ldje1, d7ldje2, d7ldjf1, d7ldjf2, d7ldjg1, d7ldjg2, d7ldjh1, d7ldjh2
      automated match to d2dd8s1
      complexed with man, nag, pg4
  75. Domain(s) for 7lm8:
  76. Domain(s) for 7lo4:
  77. Domain(s) for 7lop:
    1. Domain d7lopa_: 7lop A: [399708]
      Other proteins in same PDB: d7lopb_, d7lopc1, d7lopc2, d7lopl1, d7lopl2, d7lopv1, d7lopv2, d7lopw_, d7lopy1, d7lopy2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7lopz_: 7lop Z: [399881]
      Other proteins in same PDB: d7lopb_, d7lopc1, d7lopc2, d7lopl1, d7lopl2, d7lopv1, d7lopv2, d7lopw_, d7lopy1, d7lopy2
      automated match to d2dd8s1
      complexed with nag
  78. Domain(s) for 7m3i:
    1. Domain d7m3ic_: 7m3i C: [403666]
      Other proteins in same PDB: d7m3ia_, d7m3ib1, d7m3ib2, d7m3ih_, d7m3il1, d7m3il2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7m3ir_: 7m3i R: [403726]
      Other proteins in same PDB: d7m3ia_, d7m3ib1, d7m3ib2, d7m3ih_, d7m3il1, d7m3il2
      automated match to d2dd8s1
      complexed with nag
  79. Domain(s) for 7m6d:
  80. Domain(s) for 7m7w:
    1. Domain d7m7wr_: 7m7w R: [403706]
      Other proteins in same PDB: d7m7wa_, d7m7wb1, d7m7wb2, d7m7wc_, d7m7wd1, d7m7wd2, d7m7we_, d7m7wf1, d7m7wf2, d7m7wh_, d7m7wl1, d7m7wl2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7m7ws_: 7m7w S: [403631]
      Other proteins in same PDB: d7m7wa_, d7m7wb1, d7m7wb2, d7m7wc_, d7m7wd1, d7m7wd2, d7m7we_, d7m7wf1, d7m7wf2, d7m7wh_, d7m7wl1, d7m7wl2
      automated match to d2dd8s1
      complexed with nag
  81. Domain(s) for 7mf1:
  82. Domain(s) for 7mkm:
  83. Domain(s) for 7mmo:
    1. Domain d7mmoc_: 7mmo C: [403656]
      Other proteins in same PDB: d7mmoa1, d7mmoa2, d7mmob1, d7mmob2, d7mmod1, d7mmod2, d7mmoe1, d7mmoe2
      automated match to d2dd8s1
      complexed with nag
    2. Domain d7mmof_: 7mmo F: [403685]
      Other proteins in same PDB: d7mmoa1, d7mmoa2, d7mmob1, d7mmob2, d7mmod1, d7mmod2, d7mmoe1, d7mmoe2
      automated match to d2dd8s1
      complexed with nag
  84. Domain(s) for 7neg:
  85. Domain(s) for 7neh:
  86. Domain(s) for 7nx6:
  87. Domain(s) for 7nx7:
  88. Domain(s) for 7nx8:
  89. Domain(s) for 7nx9:
  90. Domain(s) for 7nxa:
  91. Domain(s) for 7nxb:
  92. Domain(s) for 7nxc:
  93. Domain(s) for 7or9:
  94. Domain(s) for 7ora:
    1. Domain d7orar1: 7ora R:333-527 [418579]
      Other proteins in same PDB: d7oraa_, d7orab_, d7orac2, d7orad_, d7orae_, d7oraf_, d7orag_, d7orah_, d7oral_, d7orar2
      automated match to d7jx3r_
      complexed with cl, gol; mutant
    2. Domain d7orac1: 7ora C:333-527 [418571]
      Other proteins in same PDB: d7oraa_, d7orab_, d7orac2, d7orad_, d7orae_, d7oraf_, d7orag_, d7orah_, d7oral_, d7orar2
      automated match to d7jx3r_
      complexed with cl, gol; mutant
  95. Domain(s) for 7r6w:
  96. Domain(s) for 7r6x:

More info for Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] from d.318.1.1 Spike protein S1

Timeline for Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] from d.318.1.1 Spike protein S1: