SCOPe 2.08: Domain d6ydid_: 6ydi D:

Lineage for d6ydid_ (6ydi D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
   core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families)
   contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 proteins)

6. Protein automated matches [190435] (12 species)
   not a true protein

7. Species Methylosinus trichosporium [TaxId:595536] [392644] (12 PDB entries)

8. Domain d6ydid_: 6ydi D: [393656]
   Other proteins in same PDB: d6ydif_, d6ydig_
   automated match to d1mtyd_
   complexed with fe2, gol

Details for d6ydid_

PDB Entry: 6ydi, 1.95 Å

PDB Description: xfel structure of the soluble methane monooxygenase hydroxylase and regulatory subunit complex, from methylosinus trichosporium ob3b, diferrous state

PDB Compounds: (D:) Methane monooxygenase component A alpha chain

SCOPe Domain Sequences for d6ydid_:

Sequence; same for both SEQRES and ATOM records:

>d6ydid_ a.25.1.2 (D:) automated matches {Methylosinus trichosporium [TaxId: 595536]}
vnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqfkviakeyarmeaakd
erqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaasamlwdsataaeqkn
gylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigplwkgmkrvfadgfisg
davecsvnlqlvgeacftnplivavtewasangdeitptvflsvetdelrhmangyqtvv
siandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvepwvktwnrwvyedwgg
iwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfarlalpdeedqawfean
ypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrvsqvpfipslakgtgs
lrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelseviaeghgvrsdgktl
iaqphtrgdnlwtledikragcvfpdplakf

Timeline for d6ydid_:

• d6ydid_ first appeared in SCOPe 2.07