SCOPe 2.07: Domain d4cr2z1: 4cr2 Z:368-909

Lineage for d4cr2z1 (4cr2 Z:368-909)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (27 families)

5. Family a.118.1.28: Proteasome/cyclosome repeat (PC repeat) [345954] (2 proteins)
   Pfam PF01851
   this is a repeat family; one repeat unit is 4cr2 Z:537-577 found in domain

6. Protein Proteasome regulatory subunit Rpn1, PC domain [346024] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346184] (1 PDB entry)

8. Domain d4cr2z1: 4cr2 Z:368-909 [345206]
   Other proteins in same PDB: d4cr21_, d4cr22_, d4cr23_, d4cr24_, d4cr25_, d4cr26_, d4cr27_, d4cr2a_, d4cr2b_, d4cr2c_, d4cr2d_, d4cr2e_, d4cr2f_, d4cr2g_, d4cr2h1, d4cr2h2, d4cr2h3, d4cr2i1, d4cr2i2, d4cr2i3, d4cr2j1, d4cr2j2, d4cr2j3, d4cr2k1, d4cr2k2, d4cr2k3, d4cr2l1, d4cr2l2, d4cr2l3, d4cr2m1, d4cr2m2, d4cr2m3, d4cr2n1, d4cr2n2, d4cr2n3, d4cr2o1, d4cr2o2, d4cr2p1, d4cr2p2, d4cr2q1, d4cr2q2, d4cr2r1, d4cr2r2, d4cr2s1, d4cr2s2, d4cr2t1, d4cr2t2, d4cr2u1, d4cr2u2, d4cr2v1, d4cr2v2, d4cr2w_, d4cr2x_, d4cr2y_, d4cr2z2, d4cr2z3

Details for d4cr2z1

PDB Entry: 4cr2, 7.7 Å

PDB Description: deep classification of a large cryo-em dataset defines the conformational landscape of the 26s proteasome

PDB Compounds: (Z:) 26s proteasome regulatory subunit rpn1

SCOPe Domain Sequences for d4cr2z1:

Sequence, based on SEQRES records:

>d4cr2z1 a.118.1.28 (Z:368-909) Proteasome regulatory subunit Rpn1, PC domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vfssagldsaqqnlassfvngflnlgycndklivdndnwvyktkgdgmtsavasigsiyq
wnldglqqldkylyvdepevkagallgigisasgvhdgevepallllqdyvtnpdtkiss
aailglgiafagskndevlglllpiaastdlpietaamaslalahvfvgtcngdittsim
dnflertaielktdwvrflalalgilymgqgeqvddvletisaiehpmtsaievlvgsca
ytgtgdvlliqdllhrltpknvkgeedadeeetaegqtnsisdflgeqvneptkneeaei
evdemevdaegeevevkaeitekkngeslegeeikseekkgkssdkdattdgknddeeee
keagivdelayavlgialialgedigkemslrhfghlmhygnehirrmvplamgivsvsd
pqmkvfdtltrfshdadlevsmnsifamglcgagtnnarlaqllrqlasyysreqdalfi
trlaqgllhlgkgtmtmdvfndahvlnkvtlasilttavglvspsfmlkhhqlfymlnag
ir

Sequence, based on observed residues (ATOM records):

>d4cr2z1 a.118.1.28 (Z:368-909) Proteasome regulatory subunit Rpn1, PC domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vfssagldsaqqnlassfvngflnlgycndklivdndnwvyktkgdgmtsavasigsiyq
wnldglqqldkylyvdepevkagallgigisasgvhdgevepallllqdyvtnpdtkiss
aailglgiafagskndevlglllpiaastdlpietaamaslalahvfvgtcngdittsim
dnflertaielktdwvrflalalgilymgqgeqvddvletisaiehpmtsaievlvgsca
ytgtgdvlliqdllhrltlayavlgialialgedigkemslrhfghlmhygnehirrmvp
lamgivsvsdpqmkvfdtltrfshdadlevsmnsifamglcgagtnnarlaqllrqlasy
ysreqdalfitrlaqgllhlgkgtmtmdvfndahvlnkvtlasilttavglvspsfmlkh
hqlfymlnagir

Timeline for d4cr2z1:

• d4cr2z1 is new in SCOPe 2.07-stable
  
• d4cr2z1 appears in the current release, SCOPe 2.08