Class c: Alpha and beta proteins (a/b) [51349] (148 folds) |
Fold c.116: alpha/beta knot [75216] (1 superfamily) core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot |
Superfamily c.116.1: alpha/beta knot [75217] (9 families) known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily all known members have dimeric structures |
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins) fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain |
Protein automated matches [196235] (2 species) not a true protein |
Species Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries) |
Domain d4yqka1: 4yqk A:1-245 [312190] Other proteins in same PDB: d4yqka2 automated match to d4mccb_ protein/RNA complex; complexed with 4gs |
PDB Entry: 4yqk (more details), 1.83 Å
SCOPe Domain Sequences for d4yqka1:
Sequence, based on SEQRES records: (download)
>d4yqka1 c.116.1.4 (A:1-245) automated matches {Haemophilus influenzae [TaxId: 71421]} mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide rliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfadglldcph ytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkea qaehn
>d4yqka1 c.116.1.4 (A:1-245) automated matches {Haemophilus influenzae [TaxId: 71421]} mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide rliqteideewsigdyvltggelpamtlidavarfipgvlgdglldcphytrpevleglt vppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehn
Timeline for d4yqka1: