SCOPe 2.06: Species: Haemophilus influenzae [TaxId: 71421]

Lineage for Species: Haemophilus influenzae [TaxId: 71421]

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.116: alpha/beta knot [75216] (1 superfamily)
core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
Superfamily c.116.1: alpha/beta knot [75217] (9 families)
known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
all known members have dimeric structures
Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins)
fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
Protein automated matches [196235] (2 species)
not a true protein
Species Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)

PDB entries in Species: Haemophilus influenzae [TaxId: 71421]:

Domain(s) for 3axz:
- Domain d3axza1: 3axz A:1-246 [196237]
  Other proteins in same PDB: d3axza2
  automated match to d1uaja_
  complexed with adn
Domain(s) for 4mcb:
1. Domain d4mcba_: 4mcb A: [235592]
  automated match to d4mcca_
  protein/RNA complex; complexed with 21w, act, gol, so4
2. Domain d4mcbb_: 4mcb B: [240533]
  automated match to d1uaja_
  protein/RNA complex; complexed with 21w, act, gol, so4
Domain(s) for 4mcc:
1. Domain d4mcca_: 4mcc A: [227801]
  automated match to d1uaja_
  complexed with 21x
2. Domain d4mccb_: 4mcc B: [240534]
  automated match to d1uaja_
  complexed with 21x
Domain(s) for 4mcd:
- Domain d4mcda_: 4mcd A: [253783]
  automated match to d1uaja_
  complexed with 22l
Domain(s) for 4ypw:
- Domain d4ypwa1: 4ypw A:1-246 [312162]
  Other proteins in same PDB: d4ypwa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fd
Domain(s) for 4ypx:
- Domain d4ypxa1: 4ypx A:1-245 [312137]
  Other proteins in same PDB: d4ypxa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fg
Domain(s) for 4ypy:
- Domain d4ypya1: 4ypy A:1-246 [312106]
  Other proteins in same PDB: d4ypya2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4f9, flc
Domain(s) for 4ypz:
- Domain d4ypza1: 4ypz A:1-246 [312095]
  Other proteins in same PDB: d4ypza2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fl
Domain(s) for 4yq0:
- Domain d4yq0a1: 4yq0 A:1-246 [312099]
  Other proteins in same PDB: d4yq0a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fm
Domain(s) for 4yq1:
- Domain d4yq1a1: 4yq1 A:1-245 [312105]
  Other proteins in same PDB: d4yq1a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fn
Domain(s) for 4yq2:
- Domain d4yq2a1: 4yq2 A:1-244 [312111]
  Other proteins in same PDB: d4yq2a2
  automated match to d4mccb_
  protein/RNA complex; complexed with efy
Domain(s) for 4yq3:
- Domain d4yq3a1: 4yq3 A:1-245 [312107]
  Other proteins in same PDB: d4yq3a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4g1
Domain(s) for 4yq4:
- Domain d4yq4a1: 4yq4 A:1-246 [312161]
  Other proteins in same PDB: d4yq4a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4g3, flc
Domain(s) for 4yq5:
- Domain d4yq5a1: 4yq5 A:1-246 [312093]
  Other proteins in same PDB: d4yq5a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4g0, flc
Domain(s) for 4yq6:
- Domain d4yq6a1: 4yq6 A:1-245 [312246]
  Other proteins in same PDB: d4yq6a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fx
Domain(s) for 4yq7:
- Domain d4yq7a1: 4yq7 A:1-246 [312169]
  Other proteins in same PDB: d4yq7a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4g4
Domain(s) for 4yq8:
- Domain d4yq8a1: 4yq8 A:1-246 [312179]
  Other proteins in same PDB: d4yq8a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4fv
Domain(s) for 4yq9:
- Domain d4yq9a1: 4yq9 A:1-246 [312127]
  Other proteins in same PDB: d4yq9a2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4go
Domain(s) for 4yqa:
- Domain d4yqaa1: 4yqa A:1-246 [312120]
  Other proteins in same PDB: d4yqaa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gn
Domain(s) for 4yqb:
- Domain d4yqba1: 4yqb A:1-245 [312134]
  Other proteins in same PDB: d4yqba2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gm
Domain(s) for 4yqc:
- Domain d4yqca1: 4yqc A:1-246 [312124]
  Other proteins in same PDB: d4yqca2
  automated match to d4mccb_
  protein/RNA complex; complexed with efw
Domain(s) for 4yqd:
- Domain d4yqda1: 4yqd A:1-246 [279381]
  Other proteins in same PDB: d4yqda2
  automated match to d1uaja_
  protein/RNA complex; complexed with 4gz
Domain(s) for 4yqg:
- Domain d4yqga1: 4yqg A:1-245 [312235]
  Other proteins in same PDB: d4yqga2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gy
Domain(s) for 4yqi:
- Domain d4yqia1: 4yqi A:1-246 [312094]
  Other proteins in same PDB: d4yqia2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gx
Domain(s) for 4yqj:
- Domain d4yqja1: 4yqj A:1-246 [312145]
  Other proteins in same PDB: d4yqja2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gt
Domain(s) for 4yqk:
- Domain d4yqka1: 4yqk A:1-245 [312190]
  Other proteins in same PDB: d4yqka2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4gs
Domain(s) for 4yql:
- Domain d4yqla1: 4yql A:1-245 [312128]
  Other proteins in same PDB: d4yqla2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h4
Domain(s) for 4yqn:
- Domain d4yqna1: 4yqn A:1-245 [312113]
  Other proteins in same PDB: d4yqna2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h3
Domain(s) for 4yqo:
- Domain d4yqoa1: 4yqo A:1-246 [312119]
  Other proteins in same PDB: d4yqoa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h1
Domain(s) for 4yqp:
- Domain d4yqpa1: 4yqp A:1-245 [312123]
  Other proteins in same PDB: d4yqpa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h6
Domain(s) for 4yqq:
- Domain d4yqqa1: 4yqq A:1-246 [312104]
  Other proteins in same PDB: d4yqqa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h7
Domain(s) for 4yqr:
- Domain d4yqra1: 4yqr A:1-246 [312115]
  Other proteins in same PDB: d4yqra2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4hq
Domain(s) for 4yqs:
- Domain d4yqsa1: 4yqs A:1-246 [312390]
  Other proteins in same PDB: d4yqsa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h9
Domain(s) for 4yqt:
- Domain d4yqta1: 4yqt A:1-246 [312112]
  Other proteins in same PDB: d4yqta2
  automated match to d4mccb_
  protein/RNA complex; complexed with 4h8
Domain(s) for 4yvg:
- Domain d4yvga1: 4yvg A:1-246 [275101]
  Other proteins in same PDB: d4yvga2
  automated match to d1uaja_
  complexed with sam
Domain(s) for 4yvh:
- Domain d4yvha1: 4yvh A:1-246 [275100]
  Other proteins in same PDB: d4yvha2
  automated match to d1uaja_
  complexed with sfg
Domain(s) for 5d9f:
- Domain d5d9fa1: 5d9f A:1-245 [321875]
  Other proteins in same PDB: d5d9fa2
  automated match to d4mccb_
  protein/RNA complex; complexed with 58g

More info for Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches

Timeline for Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches:

Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches first appeared in SCOPe 2.02
Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches appears in SCOPe 2.05
Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches appears in SCOPe 2.07
Species Haemophilus influenzae [TaxId:71421] from c.116.1.4 automated matches appears in the current release, SCOPe 2.08